| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,035,820 | G→A | R154R (CGC→CGT) | prfB ← | peptide chain release factor RF2 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,035,820 | 0 | G | A | 90.0% | 17.5 / ‑3.1 | 10 | R154R (CGC→CGT) | prfB | peptide chain release factor RF2 |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (4/5); total (4/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.49e-01 | |||||||||||
AAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGG‑ATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCTGTGCTTCCGTACCGCCAGACCCCGCCTGAATATCGAGGTAGCAGTCGGCGCTGTCATATTCGCCAGAGAACATACGGCGGAACTCAAGCTGCGCCAGTTTTTCTTCCAGGGCGTCGAGTTCAGCAACGGCTTCGTTAAAGGTTTCTTCGTC > NC_000913/3035615‑3036008 | aaaaaaacGCGGGGCGGAACGGCGGGTGGCGACGCCCGCCGGAGTCAAGCGGGCTTTTACGCCCCGGGGGGTGAACGCCGGTTTCTGTCCGCAGCCAGCCGTAAGCGAAATCGCGGGAGATTTTGATCGTCAGGG‑ATTTAATCCCCGCCACTTCACCTTCCGACTCTTCGATGATGTCAGTTTTGAAACCACGCGATTCTGCCCAACGCAGATACATACGCTCAAGCAGGCTCGCCCAGTCCTGTGCTTcc < 1:213243/247‑1 (MQ=255) gAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGG‑ATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAACGCAGATACATACGCTCAATCATGCTCGCCCAGTCCTGTGCTTCCGTAcc > 1:19180/1‑245 (MQ=255) gAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTAACCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATAGTCACGG‑ATTTAATACCCGCCACTTCACCTTCCGACTCTTAGATGATTTCAGTTTTGAAACCACGCGATTCTGCCTAACGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCTGTGCTTCCGTACCGcc > 1:163384/1‑248 (MQ=255) agcaggTAAGCTTAATCGCCGGAGATTGTGTTCGT‑ACGGTATTTAATTCCCGCCACTTCTCCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATACTGCCCAACGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCTGTGCTTCCGTACCGCCAGACCCCGCCTGAATATCGAGGTAGCAGTCGGCGCGGTCATATTCGCCAGAGAACATACGGCGGAACTCAAGCTGCGCCAGTTTttc < 1:242384/246‑1 (MQ=255) gCGTAATCGCCGGAGATTTTGATCGTCACGG‑ATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAAAGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCTGTGCTTCCGTACCGCCAGAcc > 1:176586/1‑160 (MQ=255) cgacggattttttGATCGTCACGA‑CTTTAACCCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAACGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCTGTGCTTCCGTACCGCCAGACCCCGCCTGAATATCGAGGTAGCAGTCGGCGCTGTCATATTCGCCAGAGAACATACGGCGGAACTCAAGCTGCGCCAGTTTTTCTTCCAGGGCGTCGAg < 1:7601/241‑1 (MQ=255) ttcagacctccccGCCGCTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAACGCAGATCCATTCGCTCAAGCATGCTCGCCCAGTCCTGGGCTTCCGGACCGCCAGACCCCGCCTGAATATCGAGGTAGCAGTCGGCGCTGTCATATTCGCCAGAGAAGATACGGCGGAACTCAAGCTGCGCCAGTGTTTCTTCCAGGGCGTCGAGTTCAGCAACGGCTTCGTTAAAg < 1:127838/240‑1 (MQ=255) cccGCCAATTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAACGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCTGTGCTTCCGTACCGCCAGACCCCGCCTGAATATCGAGGTAGCAGTCGGCGCTGTCATATTCGCCAGAGAACATACGGCGGAACTCAAGCTGCGCCAGTTTTTCTTCCAGGGCGTCGAGTTCAGCAACGGCTTCGTTAAAGGTTTCTtcgtc > 1:75552/1‑251 (MQ=255) nncGACTCNNCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAACGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCTGTGCTTCCGTAcc < 2:19180/96‑1 (MQ=255) cANNCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCTGTGCTTCCGTACCGCCAGACCCCGCCTGAATATCGAgg < 2:14817/92‑1 (MQ=255) | AAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGG‑ATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCTGTGCTTCCGTACCGCCAGACCCCGCCTGAATATCGAGGTAGCAGTCGGCGCTGTCATATTCGCCAGAGAACATACGGCGGAACTCAAGCTGCGCCAGTTTTTCTTCCAGGGCGTCGAGTTCAGCAACGGCTTCGTTAAAGGTTTCTTCGTC > NC_000913/3035615‑3036008 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |