| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,909,414 | G→A | P229L (CCG→CTG) | kdgR ← | DNA‑binding transcriptional repressor KdgR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,909,414 | 0 | G | A | 90.0% | 20.5 / NA | 10 | P229L (CCG→CTG) | kdgR | DNA‑binding transcriptional repressor KdgR |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (4/5); minor base C (1/0); total (5/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGAAATTTTGCGCGCTGCGGTATGCAACATTGCGACATATTCCTGTAAACGCTCTTCAGAGAAACGCAACGTCGGGAAGGAGATGCTCAAACCGGCAATGACCACGCCAAAGCGATCAAATACCGGTACCGCAATGCATCGCAGCCCTTCTTCCTGCTCTTCATTATCTTCGCCATACCCCTGCTCGCGCACCTGGTCCAGAACGGGTAATAACGCTTCTGTACTGGTGATGGTCCGCTCGGTACTGCGTTTATACTCCACGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCATGCC > NC_000913/1909294‑1909644 | ngTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGAAATTTTGCGCGCTGCGGTATGCAACATTGCGACATATTCCTGTAAACGCTCTTCAGAGAAACGCAACGTCAGGAAGGAGATGCTCa > 1:23678/2‑136 (MQ=255) aCGGATAGTCGTGATAACCCATTTGGGCAGAAATTTTGCGCGCTGCGGTATGCAACATTGCGACATATTCCTGTAAACGCTCTTCAGAGAAACGCAACGTCAGGAAGGAGATGCTCCAACCGGCAATGACCACGCCAAAGCGATCAAATACCGGTAc > 1:136910/1‑157 (MQ=255) tGGGCAGAAATTTTGCGCGCTGCGGTATGCAACATTGCGACATATTCCTGTAAACGCTCTTCAGAGAAACGCAACGTCAGGAAGGAGATGCTCAAACCGGCAATGACCACGCCAAAGCGATCAAATACCGGTACCGCAATGCATCGCAGCCCTTCTTCCTGCTCTTCATTATCTTCGCCATACCCCTGCTCGCGCACCTGGTCCAGAACGGGTAATAACGCTTCTGTACTGGTGATGGTCCGCTCGGTAc < 1:14255/250‑1 (MQ=255) naaaTTTTGCGCGCTGCGGTATGCAACATTGCGACATATTCCTGTAAACGCTCTTCAGAGAAACGAAACGTCAGGAAGGAGATGCTCAAACCGGCAATGACAACGCCAAAGCGATCAAATACCGGTACCGCAATGCATCGCAGCCCTTCTTCCTGct > 1:48308/2‑157 (MQ=255) tttGCGCGCTGCGGTATGCAACATTGCGACATATTCCTGTAAACGCTCTTCAGAGAAACGCAACGTCAGGAAGGAGATGCTCAAACCGGCAATGACCACGCCAAAGCGATCAAATACCGGTACCGCAATGCATCGCAGCCCTTCTTCCTGCTCTTCATTATCTTCGCCATACCCCTGCTCGCGCACCTGGTCCAGAACGGGTAATAACGCTTCTGTACTGGTGATGGTCCGCTCGGTACTGCGTTTATAc < 1:133903/250‑1 (MQ=255) cAACATTGCGACATATTCCTGTAAACGCTCTTCAGAGAAACGCAACGTCAGGAAGGAGATGCTCAAACCGGCAATGACCACGCCAAAGCGATCAAATACCGGTACCGCAATGCATCGCAGCCCTTCTTCCTGCTCTTCATTATCTTCGCCATACCCCTGCTCGCGCACCTGGTCCAGAACGGGTAATAACGCTTCTGTACTGGTGATGGtn < 1:29961/211‑2 (MQ=255) atTCCTGTAAACGCTCTTCAGAGAAACGCAACGTCCGGAAGGAGATGCTCAAAACGGCCCTGCCCCGGCCAAAACAATCAACTACCGGTACAGCAATGCCTCGCAGCCCTTCTTCCTGCTCTTc > 1:225892/1‑124 (MQ=255) aaaCGCTCTTCAGAGAAACGCAACGTCAGGAAGGAGATGCTCAAACCGGCAATGACCACGCCAAAGCGATCAAATACCGGTACCGCAATGCATCGCAGCCCTTCTTCCTGCTCTTCATTATCTTCGCCATACCCCTGCTCGCGCACCTGGTCCAGAACGGGTAATAACGCTTCTGTACTGGTGATGGTCCGCTCGGTACGGCGTTTATACTCCACGCCCTCAAGAATTTGCTTCACTTCatcgcgatcgc < 1:192824/250‑1 (MQ=255) ntctTCAGAGAAACGCAACGTCAGGAAGGAGATGCTCAAACAGGCAATGACCACGCCAAAGCGATCAAATACCGGTACCGCAATGCATCGCAGCCCTTCTTCCTGCTCTTCATTATCTTCGCCATACCCCTGCTCGCGCACCTGGTCCAGAACGGGTAATAACGCTTCTGTACTGGTGATGGACCGCTCGGTACTGCGTTTATACTCCACGCCCTCCAGAATTTGCTTCACTTCATCGCGATCGCGCCATg > 1:26097/2‑251 (MQ=255) tCAGAGAAACGCAACGTCAGGAAGGAGATGCTCAAACCGGCAAGGACCACGCCAAAGCGATCAAATACCGGTACCGCAATGCATCTCAGCCCTTCTTCCTACTCTGCATTATCTTCGCCATACCCCGGCTCGCGCACGTGGTCCATAACGGTTAATAACGCTTGTGTACTGGTGATGGTCCTCTCGGTAGTGGGTGTATACTCCACGCGCTGAAGAATTGGCTTCACTTCATCGCGATCGCGCCATGcc < 1:251189/249‑1 (MQ=255) | GGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGAAATTTTGCGCGCTGCGGTATGCAACATTGCGACATATTCCTGTAAACGCTCTTCAGAGAAACGCAACGTCGGGAAGGAGATGCTCAAACCGGCAATGACCACGCCAAAGCGATCAAATACCGGTACCGCAATGCATCGCAGCCCTTCTTCCTGCTCTTCATTATCTTCGCCATACCCCTGCTCGCGCACCTGGTCCAGAACGGGTAATAACGCTTCTGTACTGGTGATGGTCCGCTCGGTACTGCGTTTATACTCCACGCCCTCAAGAATTTGCTTCACTTCATCGCGATCGCGCCATGCC > NC_000913/1909294‑1909644 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |