| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 855,421 | C→T | M108I (ATG→ATA) | ldtB ← | L,D‑transpeptidase LdtB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 855,421 | 0 | C | T | 80.0% | 16.1 / ‑5.0 | 10 | M108I (ATG→ATA) | ldtB | L,D‑transpeptidase LdtB |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (3/5); minor base A (2/0); total (5/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATACAGCCCCATCGGGTTATCCGGACCTGCCGGAACGACAGCCGGAAGCGGTTCGCCCGCAGCGCGGTACTCTGCGTGCATTTTGGCGGTCGGCGTCCAGGTCGGGCCTGCTTTTTTACGCTCAACTTTGGTGGTCCAGTTGATAGGCGTATCTTTGCCTAACTGACCAATGCCGATCGGCAGCACGATAACGGTGTTGGTCCCTTTCGGATAGTAATAAAGACGCATCTCAGCACTGTTAATGACGATGCCTTCATGAACGGTATCCGGCAGGATCAGCTGCTGCGGAATGTTCAGTACAGTACCGCCTTTCGGCAGGAAGGTATCCACACCCGGGTTCGCTTCCATCATATTGGAAAGCCCCATCTGGTACTCGGCGGCAAAATACTCCAGCGGCTGAGTGTTACCTTCAGGAATGGTGATCACCTGATTCTGACCAACCAGGCGACTCCCGTCGGTTGGCAGAGGA > NC_000913/855196‑855664 | aTACAGCCCCATCGGGTGATCCGGACCGGCCGGAACGACAGCCGGAAGCGGTGCGTTCGCAGCGCGGTACTCTGCGTGCATTTTGGCGGTCTGCGTCCAGGTCGTTCCTGCTTTTTGACGCTCATCTGTGGTGGTGCAGTTGATAGGCGTATCTTGGTCTAACTGACCAATGTCGATCGTAAGCGCGATAACGTTGTTGGTCCCTTTCGGATAGTAATAAAGACGTATCTCAGCACTGTTAATGTCGATGc < 1:186972/251‑1 (MQ=255) cGGACCTGCCGGAACGACAGCCGGAAGCGGTTCGCTCGCAGCGCGGTACTCTGCGTGCATTTTGGCGGTCGGTGTCCAGGTCGGGCCTGCTTTTTTACGCTCAACTTTGGTGGTCCAGTTGATAGGCGTAGCTTTGCCTAACTGACCAATGCCGATCGGCAGCACGATAACTGTTGTGGTCCCTTTCGGATAGTAATAAAGACGTATCTCAGc < 1:222893/213‑1 (MQ=255) cGGAAGCGGTTCGCTCGCAGCGCGGTACTCTGCGTGCATTTTGGCGGTCGGCGTCCAGGTCGGGCCTGCTTTTTTACGCTCAACTTTGGTGGTCCAGTTGATAGGCGTATCTTTGCCTAACTGACCAATGCCGATCGGCAGCACGATAACGGTGTTGGTCCCTTTCGGATAGTAATAAAGACGTATCTCAGCACTGTTAATGACGATGCCTTCATGAACGGTATCCGGCAGGATCAGCTGCTGCGGAATGt > 1:8852/1‑251 (MQ=255) tgttggtCCAGTGGATAGGCGTATCTTTGCCTAACTGACCAATGCCGATCGGCAGCACGATAACGGTGTTGGTCCCTTTCGGATAGTAATAAAGACGTATCTCAGCACTGTTAATGACGATGCCTTCATGAACGGTATcc < 1:193918/137‑1 (MQ=255) nccTAACTGACCAATGCCGATCGGCAGCACGATAACGGTGTTGGTCCCTTTCGGATAGTAATAAAGACGTATCTCAGCACTGTTAATGACGATGCCTTCATGAACGGTATCCGGCAGGATCAGCTGCTGCGGAATGTTCAGTACAGTACCGCCTTTCGGCAGGAAGGTATcc > 1:24948/2‑172 (MQ=255) ccTAACTGACCAATGCCGATAGGCAGCACGATAACGGTGTTGGTCCCTTTCGGATCGTAATAAAGACGAATCTCAGCACTGTTAATGACGATg > 1:132845/1‑93 (MQ=255) ncagccCNNTAACGGTGTTGGTACCTTTCGGATAGTAAGAAAGACGTATCTCAGCACTGTTAATGACGATGCCTTCATGAACGGTATTCGGCAGGAt < 2:17665/96‑1 (MQ=255) ggTGTNGGTCANTNNCGGATAGTAAAAAAGACGTNTCTCAGCACTGTTAANGACGNTGCCTNCANg > 2:97239/1‑66 (MQ=255) aaGACNAATCANANNACTGTTAATGCCGATGCCTNCATGAACGGTATCCGNCAGGNTCAgcngc > 2:100774/1‑64 (MQ=255) aaGACGTATCTCAGCACTGTTAATGACGATGCCTTCATGAACGGTATCCGGCAGGATCAGCTGCTGCGGAATGTTCAGTACAGTACCGCCTTTCGGCAGGAAGGTATCCACACCCGGGTTCGCTTCCATCATATTGGAAAGCCGCATCTGGTACGCGGCGGCAAAATGCTCCAGCGGCTGAGTGTTACCTTGAGGAATGGTGATCACCTGATGCTTACCAACCAGGCGACTCCCGTCGGTTGGCAGAGGa < 1:100774/250‑1 (MQ=255) | ATACAGCCCCATCGGGTTATCCGGACCTGCCGGAACGACAGCCGGAAGCGGTTCGCCCGCAGCGCGGTACTCTGCGTGCATTTTGGCGGTCGGCGTCCAGGTCGGGCCTGCTTTTTTACGCTCAACTTTGGTGGTCCAGTTGATAGGCGTATCTTTGCCTAACTGACCAATGCCGATCGGCAGCACGATAACGGTGTTGGTCCCTTTCGGATAGTAATAAAGACGCATCTCAGCACTGTTAATGACGATGCCTTCATGAACGGTATCCGGCAGGATCAGCTGCTGCGGAATGTTCAGTACAGTACCGCCTTTCGGCAGGAAGGTATCCACACCCGGGTTCGCTTCCATCATATTGGAAAGCCCCATCTGGTACTCGGCGGCAAAATACTCCAGCGGCTGAGTGTTACCTTCAGGAATGGTGATCACCTGATTCTGACCAACCAGGCGACTCCCGTCGGTTGGCAGAGGA > NC_000913/855196‑855664 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |