| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 358,860 | C→T | A21V (GCC→GTC) | cynT → | carbonic anhydrase 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 358,860 | 0 | C | T | 92.3% | 27.1 / ‑6.4 | 13 | A21V (GCC→GTC) | cynT | carbonic anhydrase 1 |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (8/4); total (9/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGGCACGGGTGAAGCTGCCATGTTCAGCCACGGCAAGAAAATAATTGATATGTCGAGAGAGCATTCGCAACCTATAAGTAAATCCAATGGAACTCATCATAAATGAGACTTTTACCTTATGACAATCGGCGAGTAGTCTGCCTCTCATTCCAGAGACAGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAGCCTTGTTTAAACAGCTGGCGACACAGCAAAGCCCGCGCACACTTTTTATCTCCTGCTCCGACAGCCGTCTGGTCCCTGAGCTGGTGACGCAACGTGAGCCTGGCGATCTGTTCGTTATTCGCAACGCGGGCAATATCGTCCCTTCCTACGGGCCGGAACCCGGTGGCGTTTCTGCTTCGGTGGAGTATGCCG > NC_000913/358627‑359051 | cggcACGGGTGAAGCTGCCATGTTCCGCCACGGCAAGAAAATAATTGATATGTCGAGAGAGCATTCGCAACCTATAAGTAAATCCAATGGAACTCATCATAAATGAGACTTTTACCTTATGACAATCGGCGAGTAGTCTGCCTCTCATTCCAGAGACAGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAGTCTTGTTTAAACAGCTgg > 1:199991/1‑251 (MQ=255) gggTGAAGCTGCCATGTTCAGCCACGGCAAGAAAATAATTGATATGTCGAGAGAGCATTCGCAACCTATAAGTAAATCCAATGGAACTCATCATAAATGAGACTTTTACCTTATGACAATCGGCGAGTAGTCTGCCTCTCATTCCAGAGACAGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAGTCTTGTTTAAACAGCTGGCGacac > 1:81161/1‑251 (MQ=255) aCCTTATGACAATCGGCGAGTAGTCTGCCTCTCATTCCAGAGACAGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATGCCAGCGCGAGGCATTTCCGAAGCGGGAAGTCTTGTTTAAACAGCTGGCGACACAGCAAAGCCCGCGCTCGCTTTTTATCTCCTGCTCCGACAGCCGTCTTGTCCCTGAGCTGGTGACTCAACGTGAGCCTGGCGATCTGTTCGTTATTCGCAACGCggg < 1:105418/250‑1 (MQ=255) agtagtCTGCCTCTCATTCCAGAGACAGACAGAGGTTAACAGTGAAAGAGATTATTCATGGCTTCATTAAATTCCAGCGCGCGGCATTTCCGAAGAGGGGAGTCTTGTTTAAACAGCTGGCGACACAGCAAAGCCCGCGCACACttttt > 1:163810/1‑149 (MQ=255) ggTGAAAGAGNTTANTTATNTANTCCTTAAATTCCATCNCGAGTCATGTCCGAAGCGGGAAGTCTTGTTTAAACAGCTGGCGANNCNNNANACCCcgcg < 2:177994/99‑1 (MQ=255) ggTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCAAGGCATTTCCCAAGCGGGACGCCTTGTTTAAACCACTCGCGACACAGCACAGCCagcg > 1:177994/1‑99 (MQ=255) gAAAGAGATTATTGATGAATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAGTCTTGTTTAAACAGCTGGCGACACAGCAAAGCCCGCGCACACTTTTTATCTCCTGCTCCGACAGCCGTCTGGTCCCTGAGCTGGTGACGCAACGTGAGCCTGGCGATCTGTTCGTTATTCGCAACGCGGGCAATATCGTCCCTTCCTACGGGCCGGAACCCGGTGGCGTTTCTGCTTCGGTGGAGTATGCCg > 1:193998/1‑251 (MQ=255) gATTCCTTAACTTCCAGCGCGAGGCATTTCCGAAGCGGGAAGTCTTGTTTAAACAGCTGGCGACACAGCAAAGCCCGCGCACACTTTTTATCTCCt > 1:89154/1‑96 (MQ=255) cgcgAGGCNTNNNCNNAGCGGGAAGTCTTGTTTAAACAGCTGGCGACACAGCAAAGCCCGNGCACACTTTTTATCTNCTNCTCCNACANCCGTCTGGTCCCTGAGCTGGTGACGCAACGTGAg > 2:182550/1‑123 (MQ=255) cgcgAGGCATTTCCGAAGCGGGAAGTCTTGTTTAAACAGCTGGCGACACAGCAAATCCCGCGCACACTTTTTATCTCCTGCTCCGACAGCCGTCTGGTCCCTGAGCTGGTGACGCAACGTGAg < 1:182550/123‑1 (MQ=255) ncgAGGCATTTCCGAAGCGGGAAGTCTTGTTTACACCGCTGGCGACACAGCAACGCCCGCGCACACTTTTTATCTCCTGCTCCGACAGCCGTCTGGTCCCTGAGCTGGTGACGCAACCTGAGCCTGGCGATCTGTTCGTTATTCGCAACGCGGGCAATATCGTCCCTTCCTACGGGCCGGAACCCGGTgg > 1:23926/2‑190 (MQ=255) gAGGCATTTCCGAAGCGGGAAGTCTTGTTTAAACAGCTGGCGACACAGCAAAGCCCGCGCACTCTTTTTATCTCCTGCTCCGACAGCCGTCTGGTCCCTGAGCTGGTGACGCAACGTGAGCCTGGCGATCTGTTCGTTATTCGCAACGCGGGCAATATCGTCCCTTCCTACGGGCCGGAACCCGGTGGCGttn < 1:54397/193‑2 (MQ=255) gAAGTCTTGTTTAAACAGCTGGCGACACAGCAAAGCCCGCGCACACTTTTTATCTCCTGCTCCGACAGCCGTCTGGTCCCTGAGCTGGTGACGCAACGTGAGCCTGGCGATCTGTTCGTTAtt > 1:90210/1‑123 (MQ=255) | CGGCACGGGTGAAGCTGCCATGTTCAGCCACGGCAAGAAAATAATTGATATGTCGAGAGAGCATTCGCAACCTATAAGTAAATCCAATGGAACTCATCATAAATGAGACTTTTACCTTATGACAATCGGCGAGTAGTCTGCCTCTCATTCCAGAGACAGACAGAGGTTAACGGTGAAAGAGATTATTGATGGATTCCTTAAATTCCAGCGCGAGGCATTTCCGAAGCGGGAAGCCTTGTTTAAACAGCTGGCGACACAGCAAAGCCCGCGCACACTTTTTATCTCCTGCTCCGACAGCCGTCTGGTCCCTGAGCTGGTGACGCAACGTGAGCCTGGCGATCTGTTCGTTATTCGCAACGCGGGCAATATCGTCCCTTCCTACGGGCCGGAACCCGGTGGCGTTTCTGCTTCGGTGGAGTATGCCG > NC_000913/358627‑359051 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |