| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,547,862 | G→A | A41T (GCC→ACC) | fimF → | type 1 fimbriae minor subunit FimF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,547,862 | 0 | G | A | 100.0% | 13.9 / NA | 7 | A41T (GCC→ACC) | fimF | type 1 fimbriae minor subunit FimF |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (1/6); total (1/6) | |||||||||||
GGGGGCGTGATGAGAAACAAACCTTTTTATCTTCTGTGCGCTTTTTTGTGGCTGGCGGTGAGTCACGCTTTGGCTGCGGATAGCACGATTACTATCCGCGGCTATGTCAGGGATAACGGCTGTAGTGTGGCCGCTGAATCAACCAATTTTACTGTTGATCTGATGGAAAACGCGGCGAAGCAATTTAACAACATTGGCGCGACGACTCCTGTTGTTCCATTTCGTATTTTGCTGTCACCCTGTGGTAATGCCGTTTCTGCCGTAAAGGTTGGGTTTACTGGCGTT > NC_000913/4547733‑4548017 | gggggCGTGATGATAAACAAACCTTTTTATCTTCTGTGCGCTTTTTTGTGGCTGGCGGTGAGTCACACTTTGGCTGCTGATAGCACGATTACGATCCGCGGCTATGTCAGTGATAACCGCTGTAGTGTGACCGCTGAATCAACCAATTTTACTGTTGAGCTGATGGAAAACGCTGCAAAGCAATTGTACAACAGTGGCGCGGCGACTCCTGTTGTTCCATTTCGTATTTTGCTGTCACCCTGTGGTAATGc < 1:119082/251‑1 (MQ=255) gTGATGAGAAACAAACCTTTTTATCTTCTGTGCGCTTTTTTGTGGCTGGCGGTGAGTCACGCTTTGGCTGCGGATAGCACGATTACTATCCGCGGCTATGTCAGGGATAACGGCTGTAGTGTGACCGCTGAATCAACCAATTTTACTGTTGATCTGATGGAAAACGCGGCGAAGCAATTTAACAACATTGGCGCGACGACTCCTGTTGTTCCATTTCGTATTTTGCTGTCACCCTGTGGTAATGCCGTTTc < 1:4862/251‑1 (MQ=255) tttGTGGCTGGCGGTGAGTCACGCTTTGGCTGCGGATAGCACGATTACTATCCGCGGCTATGTCAGGGATAACGGCTGTAGTGTGACCGCTGAAGCAACCAAGTTGACTGTTGATCt < 1:89049/117‑1 (MQ=255) cGGTGAGTCACGCTGTGGCTGCGGATAGCACGATTACTATCCGCGGCTATGTCAGGGATAACGGCTGTAGTGTGACCGCTGAATCAACCAATTTTACTGTTGATCTGATGGAAAACGCGGCGAAGCAATTTAACAACATGGGCGCGACGACGCCTGTTGTTCCATTTCGTATTTTGc < 1:105896/177‑1 (MQ=255) aagATTACTATCCGCGGCTATGTCAGGGAAAACGGCTGTAGTGTGACCGCTGAATCAACCAATTTTACTGTTGATCTGATGGAAAACGCGGCGAAGCAATTTAACAACATTGGCGCGACGACTCCTGTTGTTCCATTTCGTATTTTGCTGTCACCCTGTGGTAATGCCGTTTCTGCCGTAAAGGTTGGGTTTACTGGCGtt < 1:13491/199‑1 (MQ=255) aCGATTACTATCCGCGGCTATGTCAGGGATAACGGCTGTAGTGTGACCGCTGAATCAACCAATTTTACTGTTGATCTGATGGAAAACGNNGCGAAg > 2:13491/1‑96 (MQ=255) tGTCAGGGATAACGGCTGTAGTGTGACCGCTGAATCAACCAATTTTACTGTTGATCTGATGGAAAACGCGGCGAAGCAATTTAACAACATTGGCGCGACGACTCCTGTTGTTc < 1:128170/113‑1 (MQ=255) | GGGGGCGTGATGAGAAACAAACCTTTTTATCTTCTGTGCGCTTTTTTGTGGCTGGCGGTGAGTCACGCTTTGGCTGCGGATAGCACGATTACTATCCGCGGCTATGTCAGGGATAACGGCTGTAGTGTGGCCGCTGAATCAACCAATTTTACTGTTGATCTGATGGAAAACGCGGCGAAGCAATTTAACAACATTGGCGCGACGACTCCTGTTGTTCCATTTCGTATTTTGCTGTCACCCTGTGGTAATGCCGTTTCTGCCGTAAAGGTTGGGTTTACTGGCGTT > NC_000913/4547733‑4548017 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |