New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979271 =	0 (0.000)	15 (1.480)	13/298	0.0	100%	intergenic (‑56/‑482)	insA5/uspC	IS1 family protein InsA/universal stress protein C
	?	NC_000913	= 2102947	NA (NA)					pseudogene (443/446 nt)	wbbL	interrupted rhamnosyltransferase WbbL

ACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAAC  >  NC_000913/1979063‑1979486                                                                                                                                                                                                                 |                                                                                                                                                                                                                        ggtaaaacggctctatgacttccaccatgttttgccatgacagaatctgctcaatgcgggccaagaaaatctcttttctggtctgacggcgcttccttctgaattccctgtaggcgaaggcaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgacccttccttaaCATACATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAt                                                                                                                                                                               <  1:172240‑M1/43‑1 (MQ=255)                             gttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTag                                                                                                                                                    >  1:91739‑M1/181‑250 (MQ=255)                                                                                         gcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccgtccttaaCATAAATGTATAAGTCATAc                                                                                                                                                                                                      >  1:72757‑M1/121‑140 (MQ=255)                                                                                                  gctgaattcactgtcggcgaaggtaagttgatgacacatgatgaaccctgttcactggctccagatgacaaacatgatctcatctcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTatc                                                                                                                                                                                    <  1:251069‑M1/38‑2 (MQ=255)                                                                                                           tctgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgtgctctccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGt                                                                                                                                                                           >  1:251788‑M1/103‑149 (MQ=255)                                                                                                                    gaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgagaaagatgatctaatatcagggacttgttcgcaccttccttaaCCTAACTGTATAAGTCATACTTTTGTTCTGGGTGTATTTAAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAACTGAAACAGGAATCATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAaataat                                                            <  1:114536‑M1/158‑1 (MQ=255)                                                                                                                            gttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTc                                                     <  1:138209‑M1/165‑1 (MQ=255)                                                                                                                               natgactcatgatgaaccctgttctatggctcaagatgacacacatgatatcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacg                                                                                                                                                        <  1:24867‑M1/66‑1 (MQ=255)                                                                                                                                                 ctgttctatggctccagatgacaaacntgatctnntancagggacttgttcgcacctnccnnnaNNNANCTGTANAANNCATACTTTTNTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgc                                                                                                                                                            <  2:57545‑M1/62‑1 (MQ=255)                                                                                                                                                 ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcacctgccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCGGTTAAAAAGTTGTTcgc                                                                                                                                                            >  1:57545‑M1/65‑126 (MQ=255)                                                                                                                                                          ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAg                      >  1:73473‑M1/56‑251 (MQ=255)                                                                                                                                                           gctccagangnnnannatgatctcatatcagggacttgttcgcaccttccttaaCATAAANGTATAAGTCATACttntgnt                                                                                                                                                                                               <  2:182378‑M1/27‑1 (MQ=255)                                                                                                                                                                                ctcatatcagggacttgttcgcaccttccttaaCATCAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgct                                                                                                                                                      <  1:94507‑M1/68‑1 (MQ=255)                                                                                                                                                                                                gttcgcaccttccgtaaCATAAATGGATAAGTCATACTTGTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaag                                                                                                                                                >  1:106982‑M1/18‑91 (MQ=255)                                                                                                                                                                                                       ncttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAAc  <  1:30531‑M1/216‑1 (MQ=255)                                                                                                                                                                                                                 |                                                                                                                                                                                                                        ACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAAC  >  NC_000913/1979063‑1979486

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.