| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 840,003 | C→T | G510D (GGC→GAC) | fiu ← | iron catecholate outer membrane transporter Fiu |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 840,003 | 0 | C | T | 88.9% | 15.0 / NA | 10 | G510D (GGC→GAC) | fiu | iron catecholate outer membrane transporter Fiu |
| Reads supporting (aligned to +/- strand): ref base C (0/1); major base T (4/4); minor base G (0/1); total (4/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAACAGCGCGGCGGTGAGCAACAGACGTTTATCCAGAACCTGCCATTTGGTGCCAATCTCGCTGGTGTTGGCTTTTTGCGGTTTAAAATCGGTGCGGTTGGCACTGTTACCGCTGCCAGACTGCGCAAGGGCGAAGTTGTTGCCGCCCGGAGGCTGCTGGGAAACGGCATAGTTAATATAGACATTGCCGTTTTCCGTCAGGTGATACAGCGCCCCGGCTTTCCAGTTCATCAGATTGCCCGACTTGGCGGTGTCGACGGTGGTGACCGGAGAACCTTTTGCCACACCAGTTGGGCAGGTGATGGCACCGCGTCCGCTGCCGCCGCAGGCGGTGGCACTGTCATATTCAGTATGATAATTATCCAGACGGATCCCGCCGTTCAGCTCAAAATCACGGGTGATTTGCAGCGTATCAAAGGCG > NC_000913/839765‑840185 | gAACAGCGCGGCGGTGAGCAACAGACGTTTATCCAGAACCTGCCATTTGGTGCCAATCTCGCTGGTGTTGGCTTTTTGCGGTTTAAAATCGGAGCGGTTGGCACTGTTACCGCTGCCAGACTGTGCAAGGGCGAAGTTGTTGCCGCCCGGAGGCTGCTGGGAAACGGCATAGTTAATATAGACATTGCCGTTTTCCGTCAGGTGATACAGCGCCCCGGCTTTCCAGTTCATCAGATTGTCCGACTTGGCgg > 1:241456/1‑251 (MQ=255) ggTGTTGGCTTTTTGCGGTTTAAAATCGGTGCGGTTGGCACTGTTACCGCTGCCAGACTGTGCAAGGGCGAAGTTGTTGCCGCCCGGAGGCTGCTGGGAAACGGCATAGTTAATATAGACAGTGCCGTTGTCCGTCAGGTGATACAGCGCCCCGGCTTTCCAGTTCATCAGATTGGCCGACTGGGCGGTGTCGACGGTGGTGACCGGAGAAGCTTTTGCCACACCAGTTGGGCAGGTGATGGCACCGCGtn < 1:32117/251‑2 (MQ=255) gCGGTTTAAAATCGGTGCGGTTGGCACTGTTACCGCTGCCAGACTGTGCCAGGGCGAAGATGTCGCCGCCCGGCGGCCGCTGGGAAAAGGCATAGTTAATATAAACATTGCCGTTTTACGTCAGGCGATACAGCGCCCCGGCTTTCCAGTTCATCAGATTGTCCGACTTGGCGGTGGAGCCGGAGGTGACCGGAGAACCTTTTGCCCCACCAGTTGGGCAGGCGATGGCACCGCGTCCGCTGCcgccgc > 1:250680/1‑249 (MQ=255) aCCGCTGCCAGACTGTGCAAGGGCGAAGTTGTTGCCGCCCGGAGGCTGCTGGGAAACGGCATAGTTAATATAGACATTGCCGTTTTCCGTCAGGTGATACAGCGCCCCGGCTTTCCAGTTCATCAGATTGTCCGACTTGGCGGTGTCGACGGTGGTGACCGGAGAACCTTTTGCCACACCAGTTg < 1:8150/185‑1 (MQ=255) gCGAAGTTGTTGCCGCCCGGAGGCTGCTGGGAAACGGCATAGTTAATATAGACATTGCCGTTTTCCGTCAGGTGATACAGCGCCCCGGCTTTCCAGTTCATCAGATTCTCCGACTTGGCGGCGTCGACGGTGGTGCCCggcgaccc > 1:133990/1‑140 (MQ=255) aGTTGTTGCCGCCCGGAGGCTGCTGGGAAACGGCATAGTTAATATAGACATTGCCGTTTTCCGTCAGGTGATACAGCGCCCCGGCTTTCCAGTTCATCAGATTGTCCGACTTGGCGGTGTCGACGGTGGTGACCGGAGAACCTTTTGCCACACCAGTTGGGCAGGTGATGGCACCGCGTCCGCTGCCGCCGCAGGCGGTGGCACTGTCATATTCAGTATGATAATTATCCAGACGGATCCCGCCGTTCAGc > 1:84701/1‑251 (MQ=255) tgttgCCGCCCGGAGGCTGCTGGGAAACGGCATAGTTAATATAGACATTGCCGTTTTCCGTCAGGTGATACAGCGCCCCGGCTTTCCAGTTCATCAGATTGTCCGACTTGGCGGTGTCGACGGTGGTGACCng < 1:199556/133‑1 (MQ=255) gggcggctgGGAAACGGCATGGTTAATATAGACATTGCCGTTTTCCGTCAGGGGATACAGCGCCCCGTCTTTCCAGTTCATCAGATTGCCCGACTTGGCGGGGGCGACGTGGGTGACCGGAGACCCTTTTGCCACACCAGTTGGGCAGGTGATGGCACCGCGGCCGCTGCCGCCGCAGGCGGTGGCTCTGTGATATTCAGTATGATAATTTTCCAGCCGGATCCCGCCGGTCAGCTCAAAATCACGGGTGa < 1:132460/246‑1 (MQ=255) atttAATATAGACATTGCCGTTTTCCGTCAGGTGATACAGCGCCCCGGCTTTCCAGTTCATCAGATTGTCCGACGGGGCGGTGTCGACGGTGGTGACCGGAGAACCTTTTGCCACACCAGTTGGGGAGGTGATGGCACCGCGTCCGCTGCCACCGCAGGCGGTGGCACTGGCATATTCAGTATGATAATTATCCAGACGGATCCCGCCGTTCAGCTCAAAATCACGGTTGATTTGCAGCGTATCAAAGGCg < 1:209248/249‑1 (MQ=255) ggTGATACAGCGCCCCGGCTTTCCAGTTCATCAGATTGTCCGACTTGGCGGTGTCGACGGTGGGGACCGGAGAACCTTTTGCCACACCAGTTGGGCAGGTg < 1:95439/101‑1 (MQ=255) | GAACAGCGCGGCGGTGAGCAACAGACGTTTATCCAGAACCTGCCATTTGGTGCCAATCTCGCTGGTGTTGGCTTTTTGCGGTTTAAAATCGGTGCGGTTGGCACTGTTACCGCTGCCAGACTGCGCAAGGGCGAAGTTGTTGCCGCCCGGAGGCTGCTGGGAAACGGCATAGTTAATATAGACATTGCCGTTTTCCGTCAGGTGATACAGCGCCCCGGCTTTCCAGTTCATCAGATTGCCCGACTTGGCGGTGTCGACGGTGGTGACCGGAGAACCTTTTGCCACACCAGTTGGGCAGGTGATGGCACCGCGTCCGCTGCCGCCGCAGGCGGTGGCACTGTCATATTCAGTATGATAATTATCCAGACGGATCCCGCCGTTCAGCTCAAAATCACGGGTGATTTGCAGCGTATCAAAGGCG > NC_000913/839765‑840185 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |