| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 751,155 | G→A | Q339* (CAG→TAG) | ybgQ ← | putative fimbrial usher protein YbgQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 751,155 | 0 | G | A | 85.7% | 12.6 / NA | 7 | Q339* (CAG→TAG) | ybgQ | putative fimbrial usher protein YbgQ |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (1/5); minor base C (1/0); total (2/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.53e-01 | |||||||||||
ACAGCATATTTTGCCCGATACCCATTGCGGCAGAATGGTAGTCATCATCAGAAATCAGCAGGCCGCCGTACAGCGAGGTGTTTGAGAGCATCCCCCAGGAAACTTCATTGCTAAAAAAGGTTTCATTTTCAGTTTGATGTGACATGGAAGGCCGTGGCTGACCCGCGGCCAATTTATAGCGAACCTGTCCCTGGCGAGTCAGGAAGGGCGTCGATGCTGCCGAAACCTGGAAATTGTTCACCCGACCATCTTCTTCCGTCACTTTGACATCCAGCGTGCCCTGAACAGACTGATTGAGGTCATCAATAATAAACGGGCCTGGCGGGACTTTTTTCTGGTAAATGACGCGGCCTGATTGACTGATCGTCACCGTGGCATTGGTC > NC_000913/750963‑751345 | acaGCATATTTTGCCCGATACCCATTGCGGCATAATGGTAGTCATCAGCAGAAATCAGCAGGCCGCCGTACAGCTAGGTGTTTGAGAGCATCCCCCAGGAAACTTCATTGCTAAAAAAGGTTTCATTTGCATGTTGATGTGACAGGTAAGGCCGTGGCTGATCCGGGGCCAATTGATATCGAACCTGTCCCTAGCGACTCAGTAAGGGCGTCTATGCTGCCGAAACCTTGAAATTGTTCACCCGACCAtct < 1:230093/251‑1 (MQ=255) cTTCATTGCTAAAAAAGGTTTCATTTTCAGTTTGATGTGACATGGAAGGCCGTGGCTGACCCGCGGCCAATTTATAGCGAACCTGTCCCTAGCGAGTCANGAANGGCGNCGNTGCTGCCGAAACCTGNAAATTGTTCACCCGACCATCTTCTTCCGTCACTTTGACATCCAGNNTNNNCNGAACAGAc < 2:175235/188‑1 (MQ=255) cTTCATTGCTAAAAAAGGTTTCATTTTCAGTTTGATGTGACATGGAAGGCAGTGGCTGAACCTCGGCCAAATTATAGCGAACTTGTCCCTCGCGAGTCAGGACGGGCGTCGATGCTGCCGAAACCTGGCAATTGTTCACCCGAACATCTTCTTCCGTCACTTTGACATCCAGCGTGCCCTGAACAGAc > 1:175235/1‑188 (MQ=255) ccGTGGCTGACCCGCGGCCAATTTATAGCGAGCCTGTCCCTAGCGAGTCAGGAAGGGCGTCGATGCTGCCGAAACCTGGAAATTGTTCACCCGACCATCTTCTTCCGTCACTTTGACATCCAGCGTGCCCTGAACAGACTGATTGAGGTCATCAATAATAAACGGGCCTGGCGCGACTGTTTTCTGGTAAATGACGCGGCCTGATTGACTGATCg < 1:61426/215‑1 (MQ=255) ccGTGGCTGAACGGCGGCCAATTTAGNGCGAACNNGTNCCTAGCGAGTCAGGACGGGNGTNNNTNNNGNCGAAANCTNNAACTTGTTCNCCCGACCATCTTCTTCCGTCACTTTGACATCCAGCGTGCCCTGGACAGACTGANTGAGGTCATNNATAATAAACGGGCCTGGCGGGNCCTNNTNNTNGTanaan > 2:61426/1‑191 (MQ=255) gCTGACCCGCGGCCAATTTATAGCGAACCTGTCCCTAGCGAGTCAGGAAGGGCGTCGAGGCTGCCGAAGCCTGGAAATTGt < 1:86778/81‑1 (MQ=255) ggCCAATTTATAGCGAACCTGTCCCTAGCGAGTCAGGAAGGGCGTCGATGCTGCCGAAACCTGGAAATAGTTCACCCGACCATCTTCTACCGTCACTGTGACATCCATCGTGCCCTGAACAGACTGAGTGAGGTCATCAATAAGAAACGGGCCGGGCGGGACTTGTTTCTGGTAAATGACGCGGCCTGATTGACTGATCGTCACCGTGGCATTGGTc < 1:245848/217‑1 (MQ=255) | ACAGCATATTTTGCCCGATACCCATTGCGGCAGAATGGTAGTCATCATCAGAAATCAGCAGGCCGCCGTACAGCGAGGTGTTTGAGAGCATCCCCCAGGAAACTTCATTGCTAAAAAAGGTTTCATTTTCAGTTTGATGTGACATGGAAGGCCGTGGCTGACCCGCGGCCAATTTATAGCGAACCTGTCCCTGGCGAGTCAGGAAGGGCGTCGATGCTGCCGAAACCTGGAAATTGTTCACCCGACCATCTTCTTCCGTCACTTTGACATCCAGCGTGCCCTGAACAGACTGATTGAGGTCATCAATAATAAACGGGCCTGGCGGGACTTTTTTCTGGTAAATGACGCGGCCTGATTGACTGATCGTCACCGTGGCATTGGTC > NC_000913/750963‑751345 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |