| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,472,103 | G→A | T98I (ACT→ATT) | pyrB ← | aspartate carbamoyltransferase catalytic subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,472,103 | 0 | G | A | 88.9% | 17.7 / ‑5.8 | 9 | T98I (ACT→ATT) | pyrB | aspartate carbamoyltransferase catalytic subunit |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (4/4); total (4/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGTGCGGCCATATTTCAGGTCACCAACCATTGCGACGTGGAGATTGTCCAGACGCCCCTGGGTTTCCTGAATAGTGAATAAGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCGGAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAA‑GTGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGCCCTTTTTACCCAGTGATGTATTGGCGCTGTCGGAGAAGCCCACCACGCTGGCCCCCAGGCGGTGCATAGATGTTTCGAAAGAGAGGCGGGTACGGGTAGAG > NC_000913/4471889‑4472240 | ggTGCGGCCATATTGCAGGTCACCAACCATTGCGACGTGGAGATTGTCCAGACGCCCCTGGGTTTCCTGAAGAGTGAATAAGTCCAGCAAGGTTTGCGTCGGATGGTGGTTGGAGCCATCACCGGCATTCAGGACCTGTACATTGCCGGAAAACTCGGTGGCCAGTCGCGCCGCACCTTCCTGCTTATGACGCATCTCTATCGCATCGACGTAAAGT‑CTGATAACCGAAATGGTATCGGCCAGCGTTTCGc < 1:227338/251‑1 (MQ=255) cATATTTCAGGTCACCCACCATTGCGACGTGGAGATTGTCCAGACGCCCCTGGGTTTCCTGAATAGTGAATAAGTCCAGCAAGGTTTGCGTCGGAAGTTGGCTGGAGCCATCCCCGGCATTCAGTACCGGTACATTGCCGGAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAA‑ATGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGCCCttttt > 1:83942/1‑250 (MQ=255) ntGAATAAGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCGGAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAA‑ATGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGCCCTTTTTACCCAGTGATGTATTGGCGCTGTCGGAGAAGCCCACCACGCTGGCCCCCAGGCGGTGCATAGATGt > 1:63892/2‑251 (MQ=255) tGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCGGAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCGCTATCGCATGGACGTAA‑ATGCGGATATCCGAAATGGTATCGGCCAGCGTTTCGCCCTTTTTACCCAGTGATGTATTg < 1:99891/180‑1 (MQ=255) gTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCGGAAAACTCGGTGGCCAGGAGCGCCGCACCTTCCTGCGGATGACGCATCACTATCCAATCGACGTAA‑ATGCTg > 1:128944/1‑123 (MQ=255) gATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCGGAAAACTCGGTGGCCAGTCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAA‑ATGCTGATAACCGAAATGGTATCGGCCAGCGTGTCGCCCTTTTTACCCAGTGATGTATTGGCGCTGTCGGAGAAGCCCACCACGCTGGCCCCCAGGCAGTGCATAGATGTTTCGAAAGAGAGTCGGTTACGGGTagng < 1:197995/251‑1 (MQ=255) gCCAGGCGCGCCGCACCTTCCTGCNGNTGACGCATCACTATCGCATCGACGTAA‑ATGCTGATAACCGAAATGGTANCGGCCAGCGTNTCGNNCTTTNTNCNCAGTGATGTATTGGCGCTGTCGGAGAAGCNCACCACGCTGGCCCCCAGGCGGTNNATNNNTGNNTCGaa < 2:191304/170‑1 (MQ=255) gCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAA‑ATGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGCCCTTTTTACCCAGTGATGTATTGGCGCTGTCGGAGAAGCCCACAACGCTGGCCCCCAGGCGGTGCATAGATGTTTCGaa > 1:191304/1‑170 (MQ=255) cATCACTATCGCATCGACGTAA‑ATGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGCCCTTTTTACCCAGTGATGTATTGGCGCTGTCGGAGAAg < 1:117086/97‑1 (MQ=255) | GGTGCGGCCATATTTCAGGTCACCAACCATTGCGACGTGGAGATTGTCCAGACGCCCCTGGGTTTCCTGAATAGTGAATAAGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCGGAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAA‑GTGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGCCCTTTTTACCCAGTGATGTATTGGCGCTGTCGGAGAAGCCCACCACGCTGGCCCCCAGGCGGTGCATAGATGTTTCGAAAGAGAGGCGGGTACGGGTAGAG > NC_000913/4471889‑4472240 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |