| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,729,371 | G→A | noncoding (74/76 nt) | gltW ← | tRNA‑Glu |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,729,371 | 0 | G | A | 90.0% | 13.1 / ‑6.4 | 10 | noncoding (74/76 nt) | gltW | tRNA‑Glu |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (3/6); minor base T (0/1); total (3/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAA‑CAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGC > NC_000913/2729194‑2729605 | gAAGATGTTTCACTTCAGATTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATGTTTCATTTTTTCAATTTTCAGCTTGTCCCAGATTTTAAAAGAGCAAATATATCAAACAAGCCTAAA‑CAGTCGGTTTTGAAATATTGAGGCCGGCGATTTTCGCCCACAAACGAGCATGGGACGTCCCTAAGGGGATCCGACCCCCTTTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGac < 1:232058/251‑1 (MQ=16) gATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAA‑CAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGACGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACg > 1:244909/1‑251 (MQ=255) cATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAA‑CAGTCTGTTTTGAGCTATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGACGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTc > 1:140717/1‑251 (MQ=255) tGTTCAGTGTTTCAATGTGCAGCGTGATCCAGATTTTAAAAGAGCAAATATATCAAACAAGACTTAA‑CGGTCTGTTTTGAGATATTGGGGGCGGCGACTTTCACTCACAACCCAGCAAGTTACTCCCCCTTGGGGATTCGGACCCCTTTTACTGCCGTGAAATGGCGGTGGCCTGGGCGTCTAGACGAAGGGGACGCGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAgat < 1:234666/245‑3 (MQ=17) ggttgttaaatttcaaGCTTGATCCAGTTTTTAAAAGAGCAATAATTTAAAACAAGACTTAA‑CTGTCTGTTTTGAGATATTGAGGGTGGCGTCTTTCCCTCACAAACCAGTAAGGGACGTCCCTTGGGGGATTCGAACCCCTTTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACAGGAAAATTGCGTATCACGGGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATan < 1:29747/236‑2 (MQ=14) cattttgacctaGATTTTAAAAGAGAAAATATAAAAAAAAAG‑CTTAAACAGTCTTTTTTAAGATATTGAGGTCGGCGACTTTCACTCCCAACCCAGCAAGGCACTTCCCCTAGGGGATCCGACCCCCGGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATATAAAGCGAACGGcc < 1:195897/239‑1 (MQ=11) aaGAGCAAATATATCAAACAAGACTTAA‑CAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCAATCACAAACCAGCAAGTGACGTCCCCTAGGGGATTCGAACACCTGTTACCGCCGTGAGAGGGCGGTGTCCTGGGCCTCTAGACGCAGGGGACACGACAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTc > 1:85840/1‑251 (MQ=255) nntttGAGNNATTGAGGTCGGCGATTTTCACTCACAACCCAGCAAGTGACGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGgtgt < 2:21651/96‑1 (MQ=11) cTTTCACTCACACACCAGCAAGGGACGTCCCCTAGGGGAGTGGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCATGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCGTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAg < 1:174145/230‑1 (MQ=11) cacaAACCAGCAGGTGTCGTCTCCTAGGGGTTTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCTCTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGc < 1:63043/251‑1 (MQ=255) | GAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAA‑CAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGC > NC_000913/2729194‑2729605 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |