| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,921,503 | C→T | V200I (GTC→ATC) | gudP ← | galactarate/D‑glucarate transporter GudP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,921,503 | 0 | C | T | 100.0% | 16.6 / NA | 8 | V200I (GTC→ATC) | gudP | galactarate/D‑glucarate transporter GudP |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (5/3); total (5/3) | |||||||||||
CCGATATAAACGCCGATCATCATCCGTGACCCTAGCAGCTGTTTGATCTGCCCCCACTTCACGCTGAACGGCACTTTAACTTTGGTGTTTTGCTGATCCATATTGATCAGCGCACCACCCGCGGCGATGTACTCCAGCTCTTTCTTATTTACCCCCGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCACTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGCCGCAACAATGCGACTGTTGCCGGGGAAAGATGGCGC > NC_000913/2921322‑2921716 | ccGATATAAACGCCGATCATCATCAGTGACCCTAGCAGCTGTTTGATCTGCCCCCACTTCACGCTGAACGGCACTTTAACTTTGGTGTTTTGCTGATCCATATTGATCAGCGCACCACCCGCGGCGATGTACTCCCGCTCTTTCTTATTTACCCCCGGATGTTGATTTGGCTCGTGGATGATTTTCAACCAGATAAAGCTGATGACaa > 1:85675/1‑208 (MQ=255) cccTAGCAGCTGTTTGATCTGCCCCCACTTCACGCTGAACGGCACTTTAACTTTGGTGTTTTGCTGATCCATATTGATCAGCGCACCACCCGCGGCGATGTACTCCAGCTCTTTCTTATTTACCCCCGGATGTTGATTTGGCTCGTGGATGATTTTCAAc > 1:44246/1‑160 (MQ=255) gcTGTTTGATCTGCCCCCACTTCACGCTGAACGGCACTTTAACTTTGGTGTTTTGCTGATCCATATTGATCAGCGCACCACCCGCGGCGATGTACTCCAGCTCTTTCTTATTTACCCCCGGATGTTGATTTGGCTCGTGGCTGATTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCACTTCATGCGTCAGCCAGCCCATAATCGGCGCGa > 1:116060/1‑246 (MQ=255) aCTCCAGCTCTTTCTTATTTACCCCCGGATGTTGATTTGGCTCGTGGATGATTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCACTTCATGCGTcagnc > 2:158209/1‑135 (MQ=255) aCTCCAGCTCTTTCTTATTTACCCCCGGATGTTGATTTGGCTCGTGGATGATTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCACTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCAcn < 1:158209/161‑2 (MQ=255) cttATTTACCCCCGGATGTTGATTTGGCTCGTGGATGGTTTTAAACCAGCAAAAGCTGACGAAAATACCCAGACAGCCCATGCAGCCAAACACATGGGACCCCCCCACTTCATGCGTCAGCCAGCCCATAATAGGCGCGCAGGTCCACGTTGCGAAGTATTGAGCGGAGTTAAAACTCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGACACAACAATGCGACTGTTGCCGGGGAAAGATgccg > 1:224805/1‑248 (MQ=255) tATTTACCCCCGGATGTTGATTTGGCTCGTGGATGATTTTCAACCAGATAAAGCTTATGACAATCCCCAGACCGCCAATAAATAAGAAGGCGTGTGACCAGCCCACTTCATGCGACAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGCCGCAACAATGTGACTGTTGCCGGGGAAAGATGgc < 1:12845/248‑1 (MQ=255) tATTTACCCCCGGATGTTGATTTGGCTCGTGGATGATTTTCAACCAGATAAAGCTGATGACAATCCCCATACCGCCCATAAAGAAGAAGACGTGTGACCACCCCACTTCAGGCGGCAGCCAGCCCAAAATCGGCGCGAAGAGCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGCCGCAACAATGCGACTGTTGCCGGGGAAAGATGgcgc < 1:144456/250‑1 (MQ=255) | CCGATATAAACGCCGATCATCATCCGTGACCCTAGCAGCTGTTTGATCTGCCCCCACTTCACGCTGAACGGCACTTTAACTTTGGTGTTTTGCTGATCCATATTGATCAGCGCACCACCCGCGGCGATGTACTCCAGCTCTTTCTTATTTACCCCCGGATGTTGATTTGGCTCGTGGATGACTTTCAACCAGATAAAGCTGATGACAATCCCCAGACCGCCCATAAAGAAGAAGACGTGTGACCAGCCCACTTCATGCGTCAGCCAGCCCATAATCGGCGCGAAGATCACCGTTGCGAAGTATTGAGCGGAGTTAAAAATCGACACCGCCGTTCCCCTTTCCTGCGCCGGAAACCAGGCCGCAACAATGCGACTGTTGCCGGGGAAAGATGGCGC > NC_000913/2921322‑2921716 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |