| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 258,827 | C→T | pseudogene (152/331 nt) | crl → | RNA polymerase holoenzyme assembly factor Crl |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 258,827 | 0 | C | T | 100.0% | 15.9 / NA | 8 | pseudogene (152/331 nt) | crl | RNA polymerase holoenzyme assembly factor Crl |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (3/5); total (3/5) | |||||||||||
AGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGC > NC_000913/258593‑259064 | caggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTTTGTTCGATAAAGCAgg < 1:12552‑M2/160‑1 (MQ=255) ggaTGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTAGATGGAGCTGGCAGCGCAGGCATCCCGTTTTACCTACAGCTACCAGTTTGGTTTGTTCGATAAAGCAGGCGACTGACAGGGTGTTCCGGTAAACGACCCTGAAGTGGTTGAACGACTGGCGCACACCCTGCGTGAGTTTCACGCGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGCACCGGCGgatg > 1:239702/3‑250 (MQ=255) cTGGTGGATGGCGCTGGAAGCGGAGGAATCCGGTTTCACCTACAGTTATCAGTTTGGTTTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACg > 1:87534/1‑149 (MQ=255) ggAAGCGCGGGAATCCAGTTTTACCTTCAGTTACCAGTTTGGGTGGTTCAAGAAAGCAGGCGACTGGAAGAGTTTTCCGGAAAAAGACCATGAAGTGGTTGAGCGACTGTAGCACACCCTGCTTGAGTGTCACAAGAAACTGCGTCAACGCCTGACCACGCGGAATCTGAAGCTCGATCCGGAGGACGATTGTAGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGcag < 1:187674/236‑3 (MQ=255) cGTTTTACCTACAGTTACCAGTTTGGTTTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGAAACTGAAGTGGTTGAACGACTGGAGCACACCCTGCGTGAGtt > 1:163915/1‑113 (MQ=255) gTTACCAGTTTGGTTTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGACTGGAGCACCCCCTGCGTGAGTTTCACGAGAAGCTGCGGGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCTGCGGATTATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATg < 1:165062/251‑1 (MQ=255) tACCAGTTTGTTTTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGACTGGAGCACCCCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGACCCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGc < 1:195205/250‑1 (MQ=255) tACCAGTTTGGTTTGTTCGAAAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGACTGGAGCACCCCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGGGGTTGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACTGCCGGCAATATTCATTAAAACTGATACGTCATGc < 1:110332/250‑1 (MQ=255) | AGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGC > NC_000913/258593‑259064 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |