| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 450,824 | C→T | V263M (GTG→ATG) | cyoA ← | cytochrome bo3 subunit 2 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 450,824 | 0 | C | T | 88.9% | 15.6 / NA | 9 | V263M (GTG→ATG) | cyoA | cytochrome bo3 subunit 2 |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (3/5); minor base G (0/1); total (3/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGGTTCATGGAACGGGACTGCATCAAGTGATAATTTTCCGAACATCTTTATTCTTCCTCAACCCCTTTAATGGGCGGATTCCGCGTGGCTCATGTCCATGCCTTCCATACCTTCGTGTGCGCTGTGCTCACCTTCTGGCTGGGTCATGTCCATGCTCTTACCGTGAGCCATAAACTTGTTAATTACATCGGCAAACAAGTCTGGTTTCACGTTGGAGAAATATTCCACCTGGTTGTATTCGCTAGGCGCGGCCAGTTTTTCGAACGCAGCCATGTCAGACATGGTGTTCGGCGACTGCTTCGCTTTTGCGACCCACTGGTCGAATGCGGCGCGATCCGGTGTTGCAATAGCTTTGAACTTCATGCCTGAGAAGCCCGGGCCGCTGTAGCTGGCGGAGATACCGTCATAAGTGCCGGGTTCGTTGGC > NC_000913/450597‑451022 | aGGTTCATGGAACGGGACTGCATCAAGTGATAATTTTCCGAACATCTTTATTCTTCCTCACCCCCTTTAATGGGCGGATTCCGCGTGGCTCATGTCCATGCCTTCCATACCTTCGTGTGCGCTGTGCTCACCTTCTGGCTGGGTCATGTCCATGCTCTTACCGTGAGCCATAAACTTGTTAATTACATCGGCAAACAAGTCTGGTTTCACGTTGGAGAAATATTCCATCTGGTTGTATGCGCTATGCGCng < 1:198359/251‑1 (MQ=255) ggAACGGGACTGCATCAAGTGATAATTTTCCGAACATCTTTATTCTTCCTCAACCCCTTTAATGGGCGGATTCCGCGTGGCTCATGTCCATGCCTTCCATACCTTCGTGTGCGCTGTGCTCACCTTCTGGCTGGGTCATGTCCATGCTCTTACCGTGAGCCATAAACTTGTTAATTACATCGGCAAACAAGTCTGGTTTCACGTTGGAGAAATATTCCATCTGGTTGTATTCTCTATGCTCGTCCAGttt < 1:202630/250‑1 (MQ=255) naTCAAGTGATAATTTTCCGAACATCTTTATTCTTCCTCAACCCCTTTAATGGGCGGATTCCGCGTGGCTCATGTCCATGCCTTCCATACCTTCGTGTGCGCTGTGCTCACCTTCTGGCTGGGTAATGTCCATGCTCTTACCGTGAGCCATAAACTTGTTAATTACATCGGCAAACAAGTCTGGTTTCACGTTGGAGAAATATTCCATCTGGTTGTATTCGCTAGGCGCGGCCAGTTTTTCGAACGCAGcc > 1:28904/2‑251 (MQ=255) cgcgTGGCTCATGTCCATGCCTTCCATACCTTCGTGTGCGCTGTGCTCACCTTCTGGCTGGGTCATGTCCATGCTCTTACCGTGAGCCATAAACTTGTTAATTACATCGGCAAACAAGTCTGGTTGCACGTTGGATAAATATTCCATCTTGTTGTATTCGCTAGGCGCGGCTAGTGTTTCGAACGCAGCCATGTCAGATATGGTGTTCGGCGACTGCTTCGCTTTTGCGACCCACTGGTCGAATGCGgcgc < 1:209290/251‑1 (MQ=255) gtgCTCACCTTCTGGCTGTGTCATGTCCATGCTCTAACCGTGAGCCATAAACTTGTTAATTACATCGGCAAACAAGTCTGGTTGCACGTTTGAGAAATATTCCAGCTGGTGGTATTCGCTAGGCGCGGCCAGTTGTTCGAACGCAGGCATGTCAGACATGGTGTTCGGCGACTGCTTCGCtttt < 1:247333/184‑1 (MQ=255) cATGTCCATGCTCTTACCGTGAGCCATAAACTTGTTAATTACATCGGCAAACACGTCTGGTTTCAAGTTGGAGTCATATTCCATCTGGTTGTATTCGCTAGGCGCGGCCAGTTTTTCGAACGCAGCCATGTCAGACATGGTGTTCGGCGACTGCTTCGCTTTTGCGACCCACTGGTCg > 1:233384/1‑178 (MQ=255) gCCATAAACTTGTTAATTACATCGGCAAACAAGTCTGGTTTAACGTTGGAGAAATATTCCATCTGGTTGTATTCGCTACGCGCGGCCAGTTTTTCGAACGCCGCCATGTCAGACCTGGTGTTCGGCGACTGCTTCGCTTTTGCGACCCACTGGTCGAATGCGGCGCGATCCGGTGTTGAAATAGCTTTGAACTTCATGCCTGAGAAGCCCGGGcc > 1:123776/1‑215 (MQ=255) aTAAACTTGTTAATTACATCGGCAAACAAGTCTGGTTTCACGTTGGAGAAATATTCCATCTGGTTGTATTCGCTAGGCGCGGCCAGTTTTTCGAACGCAGc < 1:35284/101‑1 (MQ=255) aaaCAAGTCTGGTTTCACGTGGGAGAAATATTCCATCTGGTTGTATTCGCTAGTCGCGGCCAGTTGTTCGAACGCAGCCATGTCAGACATGGTGTTCGGCGACTGCTTCGCTTTTGCGACCCACTGTTCGAATGCGTCGCGATCCGGTGTTGCAATAGCTGGGAACTTCATGCCTGAGAAGCCCGTGCCGCTGTAGCTGGCGGAGATACCGTCATAAGTGCCGGGTTCGTTGGc < 1:162806/234‑1 (MQ=255) | AGGTTCATGGAACGGGACTGCATCAAGTGATAATTTTCCGAACATCTTTATTCTTCCTCAACCCCTTTAATGGGCGGATTCCGCGTGGCTCATGTCCATGCCTTCCATACCTTCGTGTGCGCTGTGCTCACCTTCTGGCTGGGTCATGTCCATGCTCTTACCGTGAGCCATAAACTTGTTAATTACATCGGCAAACAAGTCTGGTTTCACGTTGGAGAAATATTCCACCTGGTTGTATTCGCTAGGCGCGGCCAGTTTTTCGAACGCAGCCATGTCAGACATGGTGTTCGGCGACTGCTTCGCTTTTGCGACCCACTGGTCGAATGCGGCGCGATCCGGTGTTGCAATAGCTTTGAACTTCATGCCTGAGAAGCCCGGGCCGCTGTAGCTGGCGGAGATACCGTCATAAGTGCCGGGTTCGTTGGC > NC_000913/450597‑451022 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |