| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,967,640 | G→A | G265G (GGC→GGT) | ptsP ← | phosphoenolpyruvate‑protein phosphotransferase PtsP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,967,640 | 0 | G | A | 87.5% | 11.3 / ‑3.8 | 9 | G265G (GGC→GGT) | ptsP | phosphoenolpyruvate‑protein phosphotransferase PtsP |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (2/5); total (3/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.25e-01 | |||||||||||
CTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACGTAAATCGCCAGCCCGCTCTTTGAGATAGTTATCACTTAGCGCGGCAAACTGTTCGGCAAATTTTTCAATGACCGTTTTTACCGCCCACTCTGCCACCGAGCCTTTATCAACCTCGGCAAACAATTCGCGACGCAGCCGGGTGTCCGAAAGCAGGTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGCGTTTGCTGTAGCGGCGAAACTCGTTTGCCGCTTCTTCCAGCGCCCCGGTCAGTCGTTCGCGTTCCAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTC > NC_000913/2967441‑2967885 | cTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGTCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACGTAAATCGCCAGCCCGCTCTTTGAGATAGTTATCACTTAGCGCGGCAAACTGTTCGGCAAATTTTTCATTGACCGTTTTTTCCGCCCACTCTGCCACCGAACCTTTATCAACCTCGGCAAACAATTCGCGACGCAGCCGGGTGTCCGa < 1:247541/247‑1 (MQ=255) accaGAATGAAACGTGCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATAAAACAGCAATCGCTGACCCAGCGCACGTAAATCGCCAGCCCGCTCGTTGAGATAGTTATCACTTAGCGCGGCAAACTGTTCGGCAAATTTTTCAATGACCGTTTTTACCGCCCACTCTGCCACCGAACCGTTATCAACCTCTGCAAACAATTCGCGACGCAGCCGGGTGTCCGAAAGCAGGTGCGAGTAAAGATc < 1:170818/251‑1 (MQ=255) cGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACGTAAATCGCCAGCCCGCTCTTTGAGATAGTTATCACTTAGCGCGGCAAACTGTTCGGCAAATTTTTCAATGACCGTTTTTACCGCCCACTCTGCCACCGAACCTTTATCAACCTCGGCAAACAATTCGCGACGCAGCCGGGTGTCCGAAAGCAGGTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGCGt > 1:226080/1‑251 (MQ=255) aCCCAGCGCACGTAAATCGCCATCCCGCTCTTTGAGATAGTTATCACTTAGCGCGGCAAACTGTTCGGCAAATTGTTCAATGACCGTTTTTACCGCCCACTCTGCCACCGAACCTTTATCAACCTCGGCAAACAATTCGCGCCGCAGCCGGGTGTCCGAAAGCAGGTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGCGTTTGCTGTAGCGGCGAAACTCGTTTGCCg < 1:62418/251‑1 (MQ=255) ccAGCCCGCTCTTTGCGATAGTTATCACTTAGCGCGGCCAACTGTTCGGCACATTTTTCAATGACCGTTTTTACCGCCAACTCTGCCACCGACCCTTTATCACCCTCGGCAAACAATTCGCGACGCAACCGGGTGTCCGAAAGCAGGTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGAGTTTGCTGTAg > 1:33971/1‑213 (MQ=255) tGTTCGGCAAATTTTTCAATGACCGTTTTTCCCGCCCACTCTGCCACCGAGCCTTTATCAACCTCGGCAAACAATTCGCGACGCAGCCGGGTGTCCGAAAGCAGGTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGCGTTTGCTGTAGCGGCGaaat < 1:74491/180‑2 (MQ=255) ggCAANTTNTNCANNGNCCGTNTTTACCGCCCACTCTGCCACCGAACCTTTATCAACCTCngn > 2:116641/1‑62 (MQ=255) ggCAAATTTTTCAATGACCGTTTTTACCGCCCACTCTGCCACCGAACCTTTATCAACCTCGGc < 1:116641/63‑1 (MQ=255) cccGAACCTTTAGCAACCTCGGCAAACAATTCTCGACTCAGCCGGGTGTCCGAAAGCAGGTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCGTTTTGTGCGCCGGCGGCAAAGCGTTTGCTCTAGCGGCGAAACTCGTTGGCCGCATCTTCCAGCGCCCCGGTCAGTCGTTCTCGTTCCAGAGCCGGATCCAACGTTGATTCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTc < 1:235158/250‑1 (MQ=255) | CTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACGTAAATCGCCAGCCCGCTCTTTGAGATAGTTATCACTTAGCGCGGCAAACTGTTCGGCAAATTTTTCAATGACCGTTTTTACCGCCCACTCTGCCACCGAGCCTTTATCAACCTCGGCAAACAATTCGCGACGCAGCCGGGTGTCCGAAAGCAGGTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGCGTTTGCTGTAGCGGCGAAACTCGTTTGCCGCTTCTTCCAGCGCCCCGGTCAGTCGTTCGCGTTCCAGAGCCGGATCCAGCGTTGATGCCTGATACACCTGTTCCATTAAAGGTAACGTGGCATCCTGCCAGCCTTC > NC_000913/2967441‑2967885 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |