| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,745,598 | G→A | Y107Y (TAC→TAT) | rimM ← | ribosome maturation factor RimM |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,745,598 | 0 | G | A | 90.9% | 20.4 / ‑3.4 | 12 | Y107Y (TAC→TAT) | rimM | ribosome maturation factor RimM |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (6/4); total (7/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.55e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.20e-01 | |||||||||||
ACCGTTTATCCGGTGGTTTAAAAACCAGGATCCCAATCTACTTCGATTGAACGAGTAGTGAGATCGACTTTCTTGATAACCTGCCCATCGAGGAACGGTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGTAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCGTCAGCAGGTTCGCCGCATCACGATCGTCAACGCCTTTCAGCTTGATGATCATGTCCTGATTGTGGTGCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAACCAGGGCTGATAGTCAAAAATGCTTTCGG > NC_000913/2745353‑2745806 | aCCGTTTATCCGGTGGTTTAAAAACCAGGATCCCAATCTTCTGCGATTGAACGAGTAGTTAGATCGACTTCCTTGATAACCTGCCCATCGAGGAACGGTTCTAGACGTTCCTGGAGACCAATCGCATCTTTCAGGTTTTCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCTGCGACTTTACCGAGATCGTAGCCTTCGTTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCaatagt < 1:182578/250‑1 (MQ=255) aTCTACTTCGATTGGACGAGTAGTGAGATCGACTTTCTAGATAACCTGCAAATCCAGGAACGGTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGACCGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGTAGCCTTCAGTGGTTACTACCTGGCAGACCATCAGGTCTTTCCAATAGTAGACCCCCTCTTCAAGCTGAGGCAGCTGCGATGAAt > 1:219509/1‑251 (MQ=255) gATTGAACGAGTAGTGAGATCGACTTTCTTGATAACCTGCCAATCGAGGAACGGTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTATCGAGATCGTAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAATAGTAGTCCCCCTCTTCAAGCTGAGGCAGATGCGATGAATCCACGACa > 1:248635/1‑250 (MQ=255) aaCCTGCCCATCGAGGAACGGTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGTTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCTAGATCGTAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAATAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCGTCAGCAGGTTCGCCGCATCAc < 1:249023/251‑1 (MQ=255) cGAGGAACGGTATGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGTAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAATAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCGTCAGCAGGTTCGCCGCATCACGATCGTCAACg < 1:57899/251‑1 (MQ=255) gTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCCTTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGTAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAATAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCGTCAGCAGGTTCGCCGCATCACGATCGTCAACGCCTTTCAGc > 1:239041/1‑251 (MQ=255) tGACGATAACGTCATTAGATCCGATTTCCATCATATCGGCGACTTTACCGAGATCGTAGCCTTCAGTGGTGACTGCCTGGCAGCCCATCAGGTCTTTCCAATAGTAGGCCCGCTCTTCAATCTTAGGCAGGTGCGATGAATCCACGACAATTTCTCAATTCGTCAGCAGGtt < 1:252027/172‑1 (MQ=255) aCGAGAACGTCATTAGATCCGGTTTTCATCATATCGAAGAGTTTACCGAGCTCGTAGCATTAAGTGGTTAATACCTGGCAGCCCATAAGCTCTTTCCATTAGTAGTCCCCCTCTTCAACCTGAGGACGTTGCGATGAATCCACGCCAATTTCACAATTGGTCAGCAGGTTCGCCGCATCACGCTCGCAAACGCCTTTCAGCTTGCTGATCATGTCCTGATTGTGGTGCTTCCACCTTTCCAGCTGTACttc > 1:233468/1‑250 (MQ=255) ggTTTCCATCATATCGACGACTTTCCCGAGAACGTAGCCTTCAGTGGTAACTGACTGGCATCCCCTCAGGGCTTTCAAATAGTCCTCCAACTATTCCAGCTGAAGCAGATGCGCTGAATCCACGACAATTTCACAATTCGTCAGCAGGTTCGCCGCATCACGATCGTCAACGCCTTTAAGCTTGATGCTCATGTCCTGATTGTGGAGCTTCCAGCTTTCCAGATGGACTTGCTGCCACTGACCCGCCTTCt > 1:171753/1‑251 (MQ=255) catATCGACGACTTTACCGAGATCGTAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAATAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCGTCAGCAGGTTCGCCGCATCACGATCGTCAACGCCTTTCAGCTTGATGATCATGTCCTGATTGTGGTGCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAAcc > 1:197351/1‑251 (MQ=255) cgacgtCTTTTCCGAGATCGTAGCCGTCAGTGGTTACTACCTGGCAGCCGTTCAGGTCTTTCCAATAGTATTCGTCCGCTGCAAGCTGAGGCAGGTGCGATGAATCCACGACAATTTCACAATTCGTcagcn < 1:50901/132‑2 (MQ=255) gCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCGTCAGCAGGTTCGCCGCATCACGATCGTCAACGCCTTTCAGCTTGATGATCATGTCCTGATTGTGGTGCGTCCAGCTTTCCAGCTGGACTTGCGGCCACTGACCCGCCTTCTGGATAAACCAGGGCTGATAGTCAAAAATGCTTTCgn < 1:54130/251‑2 (MQ=255) cnTTCAGTGGTTACTACCTGGCAGCCCCTCAGGTCTTTCCAATAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCGTCAGCAGGTTCGCCGCATCACGATCGTCAACGCCTTTCAGCTTgatgat > 1:198988/1‑152 (MQ=255) | ACCGTTTATCCGGTGGTTTAAAAACCAGGATCCCAATCTACTTCGATTGAACGAGTAGTGAGATCGACTTTCTTGATAACCTGCCCATCGAGGAACGGTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGTAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCGTCAGCAGGTTCGCCGCATCACGATCGTCAACGCCTTTCAGCTTGATGATCATGTCCTGATTGTGGTGCTTCCAGCTTTCCAGCTGGACTTGCTGCCACTGACCCGCCTTCTGGATAAACCAGGGCTGATAGTCAAAAATGCTTTCGG > NC_000913/2745353‑2745806 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |