| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,376,438 | G→A | S41N (AGC→AAC) | ecnA → | entericidin A lipoprotein, antidote to entericidin B |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,376,438 | 0 | G | A | 88.9% | 16.9 / ‑5.9 | 9 | S41N (AGC→AAC) | ecnA | entericidin A lipoprotein, antidote to entericidin B |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (2/6); total (2/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTTGTGGTGCGGCCTGCAGGCTGCACCATCACTTATTCAGGTCAGAGATGATGAAACGCCTTATCGTTCTTGTTTTGCTTGCCAGCACGCTGCTCACGGGCTGTAACACCGCTCGCGGTTTCGGCGAAGACATCAAACATCTCGGCAACTCCATCTCTCGCGCTGCCAGCTAATTTTTCTTCTCTTCCGAAAAATCATCAGATTCCCATCATTTTTGGCGATGTTGTCTATTATTAATTTGCTATAGGCAAACATAAATAACATTACCTAAAAGGAAGACGTTATGGTGAAGAAGACAATTGCAGCGATCTTTTCTGTTCTGGTGCTTTCAACAGTATTAACTGCCTGCAACACCACGCGTGGCGTTGGTGAAGACATTTCTGATGGCGGTAACGCGATTTCTGGCGC > NC_000913/4376270‑4376677 | gTTGTGGTGCGGCCTGCAGGCTGGACCATCACTTATTCAGGTCAGAGATGATGAAACGCCTTATCGTTCTTTTTTTGCTTGCCAGCACGCTGCTCACGGGCTGTAACACCGCTCGCGGTTTCGGCGATGTCATCAAACAGCTCGGCAACCCCATCGCTCGCGCTGCCAACTAATTTCTCGTCTCTTCCGAAAAATCTTCAGATTGCCAGCATTTTTGGCGATGTTGTCtatt < 1:214405/232‑1 (MQ=255)gTTGTGGTGCGGCCTGCAGGCTGCACCATCACTTATTCAGGTCAGAGATGATGAAACGCCTTATCGTTCTTGTTTTGCTTGCCAGCACGCTGCTCACGGGCTGTAACACCGCTCGCGGTTTCGGCGAAGACATCAAACATCTCGGCAACTCCATCTCTCGCGCTGCCAACTAATTTTTCTTCTCTTCCGAAAAATCATCAGATTCCCATCATTTTTGGCGAtgtn < 1:155434/225‑2 (MQ=255) tCAGGGCAGAGATGATGAAACGCCTTATCGTTCTTGTTTTGCTTGCCAGCACGCTGCTCACGGGCTGTAACACCGCTCGCGGTTTCGGCGAAGACATCAAACATCTCGGCAACTCCATCTCTCGCGCTGCCAACTAATTTTTCTTCTCTTCCGAAAAATCATCAGATTCCCATCAGTTTTGGCGATTTTGTCTATTAGTAAGTTGCTATATGCAAACATAAATAACATTCCCTAAAAGGAAGACGTTATg < 1:182041/250‑1 (MQ=255) ntgctCACGGGCTGTAACACCGCTCGCGGTTTCGGCGAAGACATCAAACATCTCGGCAACTCCATCTCTCGCGCTGCCAACTAATTTTTCTTCTCTTCCGAAAAATCATCAGATTCCCATCATTTTTGGCGATGTTGTCTATTATTAATTTGCTATAGGCAAACATAAATAACATTACCTAAAAGGAAGACGTTATGGTGAAGAAGACAATTGCAGCGATCTTTTCTGTTCTGGTGCTTTCAACAGTAtt > 1:156763/2‑250 (MQ=255) ggcggTAACACCGCTCGCGGTTTCGGCGAAGACATCAAACATCGCGGCAACTCTATCTCTCGCGCTGCCAGCTAATTTTTCTTCTCTTCCTAAAAATCATCAGATTCCCATCATTTTTGGCGAtgttgt < 1:188518/125‑1 (MQ=255) ggCTGNNACNNNGCNNGCGGTTTCGGCGAAGACATCAAANATCTCGGCAACTCCATCTCTCGCGCTGCCNANTNCTTTNNCTTNTCTTCCGAAANATCATCAGATTCCCATCATTTTTGGCGAtgttgt > 2:188518/1‑129 (MQ=255) ggCGAAGACATCAAACATCTCGGTAACTCCATCTCTCGCGCTGCCAACTAATTTTTCTGCTCTTCCGAAAAATCATCAGATTCCCATCATTTTTGGCGATGTTGTCTATTATTAATTTGCTATAGGCAAACATAAATAACATGACCTAAAAGGAAGACGTTATGGTGAAGAAGACAAGTGCAGCGATCTTGTCTGTTCTGGCGCTTTCAACAGTATTAACTGCCTGCAACACCACGCGTgn < 1:53302/241‑2 (MQ=255) cgcgCTGCCAACTAATTTTTCTTCTCTTCCGAAAAATCATCAGATTCCCATCATTTTTGGCGATGTTGTCTATTATTAATTTGCTATAGGCAAACATAAATAACATTACCTAAAAGGAAGACGTTATGGTGAAGAAGACAAGTGCAGCGATCTTTTCTGTTCTGGTGCTTTCAACAGTATTAACTGCCTGCAACACCACGCGTGGCGTTGGTGAAGACATTTCTGATGGCGGTAACGCGATTTCTGgcgc < 1:83916/250‑1 (MQ=255) gCCAACTAATTTTTCTTCTCTTCCGAAAAATCATCAGATTCCCATCATTTTTGGCGATGTTGTCTATTATTAATTTGCTATAGTCAAACATAAATAACATTACCTAATAGTAATACGTTATTGGGAAGAAGACAATTGCAGCGTTCTTTTCTGTTCTGGTGCTTTCAACAGTATTAActgc < 1:110930/181‑1 (MQ=255) | GTTGTGGTGCGGCCTGCAGGCTGCACCATCACTTATTCAGGTCAGAGATGATGAAACGCCTTATCGTTCTTGTTTTGCTTGCCAGCACGCTGCTCACGGGCTGTAACACCGCTCGCGGTTTCGGCGAAGACATCAAACATCTCGGCAACTCCATCTCTCGCGCTGCCAGCTAATTTTTCTTCTCTTCCGAAAAATCATCAGATTCCCATCATTTTTGGCGATGTTGTCTATTATTAATTTGCTATAGGCAAACATAAATAACATTACCTAAAAGGAAGACGTTATGGTGAAGAAGACAATTGCAGCGATCTTTTCTGTTCTGGTGCTTTCAACAGTATTAACTGCCTGCAACACCACGCGTGGCGTTGGTGAAGACATTTCTGATGGCGGTAACGCGATTTCTGGCGC > NC_000913/4376270‑4376677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |