| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 780,845 | G→A | noncoding (3/76 nt) | lysW → | tRNA‑Lys |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 780,845 | 0 | G | A | 90.0% | 17.8 / ‑6.2 | 10 | noncoding (3/76 nt) | lysW | tRNA‑Lys |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (2/7); minor base T (0/1); total (2/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGG > NC_000913/780614‑781038 | ccTGCACGACCCACCAATCGCTAAGGTGGAAGCTGTAGTAAAACGTGAAGGATAACGTTGCATGCGCAACGGCCCGAAGGGCGAGGCGAAGTCGAGTCATCCTGCACGACCCACCACTAACATAGTTAGTGGTAGTATCCAGCGTAGTATCGGGTGAATAGCTCAGCATGGAGAGCCCCTCCCATACAAGGAGTGGGTCCGCGGTTCGATCGCGTCGGCACGCACCGCCGGATCGTTAGCTCAGTTGGTag < 1:12592/251‑1 (MQ=37) gAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGGGAGACGAAGTCGAGTCATCATGCACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTAGCGGGTGAGTAGCTCAGCTGGGAGAGAACCTCTCTTACAAGGAGGGGTTCGGGGGTTCGATCCCATCATCACCAACTACCGGATCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCAc < 1:41492/250‑1 (MQ=21) tGCATGAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCCCCGGATCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGGTCGAATCCTGCACGAcc < 1:62217/242‑1 (MQ=255) cATGAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCCCCCCCGGATCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAATGGTCGCAGGTTCGAATCCTGCACGACccacccgatcgg > 1:94688/1‑244 (MQ=255) gTCATCCTGCACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCCCCTCCCTTACAAGGAGGGGGTCGGCGGGTCGATCCCGTCATCACCCACCACCGGATCGTTAGGTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCt < 1:136214/197‑1 (MQ=255) aTCCTGCACGACCCACCGCTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCGGGGAGAGCACCTCCCTGACAAGGAGGGGGTCGGCGGTTCGATCCCGGCATCACCCACCACCGGATCGTTAGCTCAGTTGGTAGAGCAGGTGACTTTTAATCAATGGGTCGCAGGTTCGAATCCTGCAGGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTg < 1:233591/251‑1 (MQ=17) caccacTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCGGATCGTTAGCTCAg < 1:188073/133‑1 (MQ=255) gCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCGGATCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTgg < 1:205675/251‑1 (MQ=255) gTTCGNNCCNNNCANNACCCACCACCGGATCGTTAGCTCNGTTGGTTGAGCAGTTGACTTTTAATCAATNGNTNGCAGNNTCGNATCTTGCTCGNCCCACCAGTTTTAACATCg > 2:191110/1‑114 (MQ=11) gTTCGATCCCGTCATCACCCACCACCGGTTCGTTAGCTCAGTTGGTGGAGCAGGTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCg < 1:191110/114‑1 (MQ=11) | CCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGG > NC_000913/780614‑781038 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |