| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 774,446 | G→A | L46L (CTG→CTA) | ybgE → | PF09600 family protein YbgE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 774,446 | 0 | G | A | 92.3% | 30.8 / NA | 13 | L46L (CTG→CTA) | ybgE | PF09600 family protein YbgE |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (5/7); minor base C (1/0); total (6/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.62e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GATTCTGGGAACGCTTCTTGCCTGTTCGTTTGGGGTAATCACCGCGCTGGCGCTTGAACACGTCGAATCAGGCAAAGCCGGTCAAGAAGACATCTGATGAGTAAGATTATCGCGACTTTGTATGCGGTAATGGACAAGCGCCCCCTGCGGGCGCTTTCCTTCGTGATGGCGCTTCTGTTAGCAGGATGTATGTTTTGGGACCCATCTCGTTTTGCCGCGAAGACCAGTGAACTGGAAATCTGGCATGGTTTATTGCTGATGTGGGCCGTCTGTGCTGGTGTGATTCACGGCGTGGGCTTTCGTCCGCAGAAGGTTCTTTGGCAAGGGATTTTTTGCCCATTGCTTGCCGATATTGTTCTCATTGTCGGGCTGATTTTCTTCTTCTTTTAAATCAGAATTCTCTTTAAAAAATTATGGGCCGCTCCAGGCCCATAAATTTTTACGCTCCCTTAACTTGC > NC_000913/774213‑774670 | gATTCTGGGAACGCTTCTTGCCTGTTCGTTTGGGGTAATCACCGCGCTGGCGCTTGAACACGTCGAATCAGGCAAAGCCGGTCAAGACGACATCTGATGAGTAGGATTATCGAGACTTTGTATTCGGTAATGGACAAGCGCCCCCTGCGGGCGCTTTCCTTCGTGATGGCGCTTCTGTTCGCAGGATGTCTGTTTTTGTACCCATCTCGTTTTGCCGCGAAGACCAGTGAACTAGACATCTggtgatcgg > 1:33739/1‑243 (MQ=255) gAACACGTCGAATCAGGCAAAGCCGGTCAAGAAGACATCTGGTGAGTACGCTTATCGCGACTTTGTCTGCGGTCATGGCCATGCGCCCACTGCGGGCGCTTTCCTTCGTGATGGCGATTCTGTTCGCAGGATGTATGTTTTGGGACCCATCTCGTTTTGCCGCGAAGACAAGTGAACTCGAAATCTGGCATGGTTTAtt > 1:113359/1‑199 (MQ=255) aaCACGTCGAATCAGGCAAAGCAGGTCAAGAAGACATCTGATGAGTAAGAATATCGCGCCTTTGTATGCGGTAATGGACAAGCGCCCCCTGCGGGCGCTTTCCTTCGTGATGGAGCTTCTGTTAGCAGGATGTATGTTTTGGGGACCATCTCGTTTTGCCGCGAAGACCAGTGAACTAGAAATCTGGCATGGTTTATTGCTGATGTGGGCCGTCTGTGCTGGTGTGATTCACGGCGTGGGCtt > 1:103350/1‑243 (MQ=255) gAATCAGGCAAAGCCGGTCAAGAAGACATCTGATGAGTAAGATTATCGCGACTTTGTATGCGGTAATGGACAAGCGCCCCCTGCGGGCGGTTTCCTTCGTGAGTGCGCTTCTGTTAGCAGGATGTATGTTTTGGGACCCTTCTCGTTTTGCCGCGAAGACCAGTGAACTAGAAACCTGGCATGGTTTATTGCTTATGTGGGCCGTCTGTGCTGGTGTGATTCACGGCGTggg < 1:124690/232‑1 (MQ=255) gAATCAGGCAAAGCCGGTCAAGAAGACATCTGATGAGTAAGATTATCGCGACTTTGTATGCGGTAATGGACAAGCGCCCCCTGCGGGCGCTTTCCTTCGTGATGGCGCTTCTGTTAGCAGGATGTATGTTTTGGGACCCATCTCGTTTTGCCGCGAAGACCAGTGAACTAGAAATCTGGCATGGTTTATTg < 1:12463/191‑1 (MQ=255) gatgaGTAAGATTATCGCGACTTTGTATGCGGTAATGGACAAGCGCCCCCTGCGGGCGCTTTCCTTCGTGATGGCGCTTCTGTTAGCAGGATGTATGTTTTGGGACCCATCTCGTTTTGCCGCGCAGACCAGTGAACTAGAAATATGGCATGGTTTATTGATGATGTGGGCCGTCTGTGCTGGTGTGATTCACGGCGTGGGCTTTTGTCCGCAGAAGGATCTTTGGCACGGGATTTTTTGCCCAttgcttg > 1:139140/1‑251 (MQ=255) gatgaGTAAGATTATCGCGACTTTGTATGCGGTAATGGACAAGCGCCCCCTGCGGGCGCTTTCCTTCGTGATGGCGCTTCTGTTAGCAGGATGTATGTTTTGGGACCCATCTCGTTTTGCCGCGAAGACCAGTGAACTAGAAATCTGGCATGGTTTATTGCTGATGTGGGCCGTCTGTGCTGGTGGGATTCACGGCGTGGTCTTTCGTCCGCATAAGGTTCTTTGGCAAGGGATTTTTTGCCCAttgcttg < 1:219241/251‑1 (MQ=255) cTTTCCTTCGTGATGGCGCTTCTGTTAGCAGGATGTATGTTTTGGGACCCATCTCGTTTTGCCGCGAAGACCAGTGAAATAGCAATCTGGCATGGTTTCTTGCTGATGTGGGCCGTCTGTGCTGGGGTGCTTCACGGAGTGGGCTTTCGTCCGCAGAAGGGTCTTTGGCAAGGGAttttttt > 1:125988/1‑181 (MQ=255) ttCTGTTAGCAGGATGTATGTTTTGGGACCCATCTCGTTTTGCCGCGAAGACCAGTGAACTAGAAATCTGGCATGGTTTATTGCTGATGTGGGCCGTCTGTGCTGGTGTGATTCACGGCGTGGGCTTTCGTCCGCAGAAGGTTCTTTGGCAAGGGATTTTTTGCCCAttgc < 1:116707/171‑1 (MQ=255) tCTGTTAGCAGGATGTATGTTTTGGGACCCATCTCGTTTTGCCGCTAAGACCAGTGAACTAGAAATCTGGCATGGTTGATTGCTGATGTGGGCCTTCTGTGCTGGTGGGATGCACGGCGTGGGCTTTCGTCCGCAGAATGTTCTTTGGCAAGGGATTTTTTGCCCATTGCTTGCCg < 1:231304/176‑1 (MQ=255) tAGCAGGATGTATGTTTTGGGACCCATCTCGTTGTGCCGCGAAGACCAGTGAACTATAAATCTGGCATGGTTTATGGCTGATGTGGGCCGTCTGTGCTGGTGTTATTCACGGCGTGGGCGTTCGTCCGCTGAAGGTTCTTTGGCAAGGGATTTTTTGCCCATTTCTTGCCGATATTGTTTTCATTGTTGGGTTGATTGTCTTCTTCTTTTAAATCAGAATTCTCATTAAAAAATTATGGGCCGCTCCAgg < 1:119736/250‑1 (MQ=255) cGTTTTGCCGCGAAGACCAGTGAACTAGAAATCTGGCCTGGTTTATTGATGATGTAGGCCGTCTGTGCTGGTGTGATCCACGGAGTGGGCTTTCGCCCGAAGACGGTTCTTTGGCAAGGGATTTTTTGCCCATTGCTTGCCGATATTGTTCTCATTGTCGGGCTGATTTTCTTCTTCTTTTAAATCAGAATTCTCTTTAAAAAATTATGGGCCGCTCCAGGCCCATAAATTTTTACGCTCCCTTAACTTGc > 1:169443/1‑251 (MQ=255) ccGCGAAGACCAGTGAACTAGAAATCTGGCATGGTTTATTGCTGATGTGGGCCGTCTGTGCTGGTGTGATTCACGGCGTGGGCTTTCg < 1:62890/88‑1 (MQ=255) | GATTCTGGGAACGCTTCTTGCCTGTTCGTTTGGGGTAATCACCGCGCTGGCGCTTGAACACGTCGAATCAGGCAAAGCCGGTCAAGAAGACATCTGATGAGTAAGATTATCGCGACTTTGTATGCGGTAATGGACAAGCGCCCCCTGCGGGCGCTTTCCTTCGTGATGGCGCTTCTGTTAGCAGGATGTATGTTTTGGGACCCATCTCGTTTTGCCGCGAAGACCAGTGAACTGGAAATCTGGCATGGTTTATTGCTGATGTGGGCCGTCTGTGCTGGTGTGATTCACGGCGTGGGCTTTCGTCCGCAGAAGGTTCTTTGGCAAGGGATTTTTTGCCCATTGCTTGCCGATATTGTTCTCATTGTCGGGCTGATTTTCTTCTTCTTTTAAATCAGAATTCTCTTTAAAAAATTATGGGCCGCTCCAGGCCCATAAATTTTTACGCTCCCTTAACTTGC > NC_000913/774213‑774670 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |