mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| JC JC | 57,276 | IS2 (+) +5 bp | intergenic (‑167/‑84) | lptD ← / → djlA | lipopolysaccharide assembly protein LptD/co‑chaperone protein DjlA |
| RA | 71,134 | G→A | G250S (GGT→AGT) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 178,317 | C→T | S49N (AGC→AAC) | btuF ← | vitamin B12 ABC transporter periplasmic binding protein |
| RA | 178,334 | C→T | T43T (ACG→ACA) | btuF ← | vitamin B12 ABC transporter periplasmic binding protein |
| RA | 178,631 | C→T | A175T (GCG→ACG) | mtn ← | 5'‑methylthioadenosine/S‑adenosylhomocysteine nucleosidase |
| RA | 200,942 | C→T | A154V (GCC→GTC) | skp → | periplasmic chaperone Skp |
| RA | 204,796 | C→T | P102S (CCG→TCG) | rnhB → | RNase HII |
| RA | 205,776 | C→T | V217V (GTC→GTT) | dnaE → | DNA polymerase III subunit alpha |
| RA | 212,279 | C→T | intergenic (+13/‑52) | yaeR → / → tilS | VOC domain‑containing protein YaeR/tRNA(Ile)‑lysidine synthetase |
| RA | 216,901 | C→T | V35I (GTA→ATA) | yaeF ← | peptidase C92 family protein YaeF |
| RA | 217,760 | C→T | G339D (GGT→GAT) | proS ← | proline‑‑tRNA ligase |
| RA | 221,249 | C→T | A125T (GCA→ACA) | metI ← | L‑methionine/D‑methionine ABC transporter membrane subunit |
| RA | 231,185 | C→T | P22S (CCG→TCG) | yafD → | endonuclease/exonuclease/phosphatase domain‑containing protein YafD |
| RA | 233,579 | C→T | S126N (AGC→AAC) | mltD ← | membrane‑bound lytic murein transglycosylase D |
| RA | 242,070 | C→T | G412R (GGG→AGG) | fadE ← | acyl‑CoA dehydrogenase |
| RA | 248,882 | C→T | intergenic (+748/‑2016) | rayT → / → dinB | REP‑associated tyrosine transposase/DNA polymerase IV |
| RA | 249,083 | C→T | intergenic (+949/‑1815) | rayT → / → dinB | REP‑associated tyrosine transposase/DNA polymerase IV |
| RA | 250,169 | C→T | intergenic (+2035/‑729) | rayT → / → dinB | REP‑associated tyrosine transposase/DNA polymerase IV |
| RA | 254,733 | C→T | P328P (CCG→CCA) | pepD ← | peptidase D |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 260,454 | C→T | L23L (CTG→TTG) | proB → | glutamate 5‑kinase |
| RA | 265,722 | C→T | Q122Q (CAG→CAA) | ykfB ← | protein YkfB |
| RA | 273,075 | C→T | L77F (CTC→TTC) | ykfC → | PF00078 domain‑containing protein YkfC |
| RA | 278,949 | C→T | intergenic (‑147/+229) | afuC ← / ← insB2 | ABC transporter ATP‑binding protein AfuC/IS1 family protein InsB |
| RA | 281,174 | C→T | L270L (CTG→CTA) | yagA ← | integrase core domain‑containing protein YagA |
| RA | 282,343 | C→T | G22G (GGC→GGT) | yagE → | putative 2‑dehydro‑3‑deoxygluconate aldolase |
| RA | 295,643 | C→T | intergenic (‑64/+53) | yagN ← / ← intF | protein YagN/putative phage integrase |
| RA | 295,941 | C→T | V386M (GTG→ATG) | intF ← | putative phage integrase |
| RA | 298,492 | C→T | E79K (GAG→AAG) | paoD ← | molybdenum cofactor insertion chaperone PaoD |
| RA | 307,380 | C→T | W651* (TGG→TGA) | ecpC ← | putative fimbrial usher protein EcpC |
| RA | 311,285 | C→T | E18K (GAA→AAA) | matA ← | DNA‑binding transcriptional dual regulator MatA |
| RA | 313,256 | C→T | intergenic (‑14/‑2035) | ykgR ← / → insE1 | putative membrane protein YkgR/IS3 element protein InsE |
| RA | 323,608 | C→T | A424V (GCT→GTT) | ykgF → | putative amino acid dehydrogenase with NAD(P)‑binding domain and ferridoxin‑like domain |
| RA | 325,124 | C→T | D81N (GAT→AAT) | ykgH ← | uncharacterized protein YkgH |
| RA | 326,430 | C→T | G273D (GGC→GAC) | betA ← | choline dehydrogenase |
| RA | 326,658 | C→T | R197H (CGC→CAC) | betA ← | choline dehydrogenase |
| RA | 336,481 | C→T | A186V (GCG→GTG) | yahE → | DUF2877 domain‑containing protein YahE |
| RA | 337,558 | C→T | P261S (CCT→TCT) | yahF → | putative acyl‑CoA synthetase YahF |
| RA | 338,812 | C→T | A163V (GCC→GTC) | yahG → | DUF1116 domain‑containing protein YahG |
| RA | 345,027 | C→T | intergenic (+36/‑377) | yahL → / → yahM | uncharacterized protein YahL/uncharacterized protein YahM |
| RA | 345,487 | C→T | G28G (GGC→GGT) | yahM → | uncharacterized protein YahM |
| RA | 353,712 | C→T | A336V (GCC→GTC) | prpE → | propionyl‑CoA synthetase |
| RA | 370,679 | C→T | P135S (CCT→TCT) | mhpB → | 3‑carboxyethylcatechol 2,3‑dioxygenase |
| RA | 375,134 | C→T | intergenic (+253/‑325) | mhpE → / → mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| RA | 377,177 | C→T | P136S (CCC→TCC) | yaiL → | DUF2058 domain‑containing protein YaiL |
| RA | 377,411 | C→T | intergenic (+100/+124) | yaiL → / ← frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| RA | 378,365 | C→T | E2K (GAA→AAA) | frmB ← | S‑formylglutathione hydrolase FrmB |
| RA | 382,629 | C→T | pseudogene (244/282 nt) | yaiX ← | putative acyltransferase, N‑terminal fragment |
| RA | 383,082 | C→T | G285D (GGC→GAC) | yaiP ← | putative glucosyltransferase |
| RA | 383,736 | C→T | G67D (GGC→GAC) | yaiP ← | putative glucosyltransferase |
| RA | 387,367 | C→T | L133L (CTG→TTG) | tauC → | taurine ABC transporter membrane subunit |
| RA | 388,832 | C→T | G299D (GGT→GAT) | hemB ← | porphobilinogen synthase |
| RA | 400,881 | C→T | A15T (GCG→ACG) | ddlA ← | D‑alanine‑‑D‑alanine ligase A |
| RA | 422,905 | C→T | P130S (CCT→TCT) | malZ → | maltodextrin glucosidase |
| RA | 438,773 | C→T | D469N (GAT→AAT) | dxs ← | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| RA | 440,384 | C→T | G240S (GGT→AGT) | ispA ← | geranyl diphosphate/farnesyl diphosphate synthase |
| RA | 441,479 | C→T | intergenic (‑136/‑70) | xseB ← / → thiI | exodeoxyribonuclease VII subunit XseB/tRNA uridine 4‑sulfurtransferase |
| RA | 502,376 | G→A | S288F (TCC→TTC) | ybaL ← | putative transporter YbaL |
| RA | 505,321 | G→A | P136P (CCG→CCA) | ushA → | 5'‑nucleotidase/UDP‑sugar hydrolase |
| RA | 506,266 | G→A | A451A (GCG→GCA) | ushA → | 5'‑nucleotidase/UDP‑sugar hydrolase |
| RA | 510,440 | G→A | L314L (CTG→TTG) | copA ← | Cu(+) exporting P‑type ATPase |
| RA | 511,514 | G→A | intergenic (‑135/‑127) | copA ← / → glsA | Cu(+) exporting P‑type ATPase/glutaminase 1 |
| RA | 518,196 | G→A | F28F (TTC→TTT) | cnoX ← | chaperedoxin |
| RA | 520,639 | G→A | G75D (GGC→GAC) | ybbP → | putative ABC transporter membrane subunit YbbP |
| RA | 522,844 | G→A | intergenic (+14/‑417) | ybbP → / → rhsD | putative ABC transporter membrane subunit YbbP/protein RhsD |
| RA | 530,193 | G→A | A345V (GCG→GTG) | selU ← | tRNA 2‑selenouridine synthase |
| RA | 530,540 | G→A | C229C (TGC→TGT) | selU ← | tRNA 2‑selenouridine synthase |
| RA | 534,609 | G→A | V232I (GTT→ATT) | gcl → | glyoxylate carboligase |
| RA | 538,791 | G→A | V387I (GTA→ATA) | ybbW → | putative allantoin transporter |
| RA | 540,612 | G→A | Q16Q (CAG→CAA) | ybbY → | putative purine transporter |
| RA | 540,923 | G→A | S120N (AGC→AAC) | ybbY → | putative purine transporter |
| RA | 542,098 | G→A | E71K (GAA→AAA) | glxK → | glycerate 2‑kinase 2 |
| RA | 548,778 | G→A | G141D (GGC→GAC) | ylbE → | DUF1116 domain‑containing protein YlbE |
| RA | 549,424 | G→A | W356* (TGG→TGA) | ylbE → | DUF1116 domain‑containing protein YlbE |
| RA | 557,635 | A→T | L36Q (CTG→CAG) | folD ← | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase |
| JC JC | 568,449 | IS2 (–) +5 bp | coding (135‑139/333 nt) | emrE → | multidrug/betaine/choline efflux transporter EmrE |
| RA | 623,386 | G→A | G363S (GGC→AGC) | entS → | enterobactin exporter EntS |
| RA | 631,633 | G→A | W580* (TGG→TGA) | cstA → | pyruvate transporter CstA |
| RA | 642,474 | T→C | Y129Y (TAT→TAC) | ybdR → | putative Zn(2(+))‑dependent alcohol dehydrogenase YbdR |
| RA | 643,399 | G→A | I7I (ATC→ATT) | yldA ← | protein YldA |
| RA | 647,057 | G→A | G151G (GGC→GGT) | citG ← | triphosphoribosyl‑dephospho‑CoA synthase |
| RA | 665,500 | G→A | L272L (CTG→TTG) | mrdB ← | peptidoglycan glycosyltransferase MrdB |
| RA | 683,107 | G→A | S96F (TCT→TTT) | hscC ← | chaperone protein HscC |
| RA | 987,152 | G→T | intergenic (‑170/+433) | ompF ← / ← asnS | outer membrane porin F/asparagine‑‑tRNA ligase |
| JC JC | 1,105,376 | IS2 (–) +5 bp | intergenic (+83/‑34) | csgC → / → ymdA | curlin chaperone/uncharacterized protein YmdA |
| RA | 1,214,513 | C→T | Q321Q (CAG→CAA) | bluF ← | blue light‑ and temperature‑regulated antirepressor BluF |
| MC JC | 1,294,035 | Δ141 bp | [tdk] | [tdk] | |
| MC JC | 1,303,073 | Δ12 bp | coding (175‑186/921 nt) | oppB → | murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB |
| RA | 1,314,350 | G→A | G111S (GGT→AGT) | ompW → | outer membrane protein W |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,443,340 | C→T | A97V (GCT→GTT) | ydbH → | putative phospholipid transport factor YdbH |
| RA | 1,450,650 | C→T | E234K (GAA→AAA) | tynA ← | copper‑containing amine oxidase |
| RA | 1,452,971 | G→A | S224S (AGC→AGT) | paaZ ← | fused 3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase and oxepin‑CoA hydrolase |
| RA | 1,494,388 | Δ1 bp | coding (684/924 nt) | ydcI ← | DNA‑binding transcriptional dual regulator YdcI |
| RA | 1,517,508 | G→T | V40V (GTG→GTT) | ortT → | orphan toxin OrtT |
| RA | 1,641,739 | C→T | intergenic (‑185/‑116) | cspB ← / → cspF | cold shock‑like protein CspB/cold shock‑like protein CspF |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| RA | 1,657,359 | G→A | F33F (TTC→TTT) | ynfC ← | PF06788 family lipoprotein YnfC |
| RA | 1,667,887 | Δ1 bp | coding (678/1221 nt) | mlc ← | DNA‑binding transcriptional repressor Mlc |
| RA | 1,681,779 | G→A | R84R (CGC→CGT) | ydgC ← | GlpM family protein |
| RA | 1,686,490 | G→A | F33F (TTC→TTT) | fumC ← | fumarase C |
| RA | 1,687,239 | G→A | S380F (TCT→TTT) | fumA ← | fumarase A |
| RA | 1,713,725 | G→A | E319E (GAG→GAA) | dtpA → | dipeptide/tripeptide:H(+) symporter DtpA |
| RA | 1,714,173 | G→A | A469T (GCC→ACC) | dtpA → | dipeptide/tripeptide:H(+) symporter DtpA |
| RA | 1,715,687 | G→A | A68V (GCC→GTC) | pdxY ← | pyridoxal kinase 2 |
| RA | 1,719,802 | G→A | intergenic (‑200/‑74) | anmK ← / → slyB | anhydro‑N‑acetylmuramic acid kinase/outer membrane lipoprotein SlyB |
| RA | 1,734,709 | G→A | S92N (AGC→AAC) | mepH → | peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase MepH |
| RA | 1,744,751 | Δ1 bp | coding (1295/1374 nt) | mdtK → | multidrug efflux pump MdtK |
| RA | 1,755,770 | G→A | D25N (GAC→AAC) | pykF → | pyruvate kinase 1 |
| RA | 1,760,546 | G→A | Q416* (CAA→TAA) | sufD ← | Fe‑S cluster scaffold complex subunit SufD |
| RA | 1,766,803 | G→A | P628L (CCA→CTA) | ydiJ ← | putative FAD‑linked oxidoreductase YdiJ |
| RA | 1,774,603 | G→A | G272D (GGC→GAC) | ydiB → | quinate/shikimate dehydrogenase |
| RA | 1,781,673 | G→A | E93E (GAG→GAA) | ydiS → | putative electron transfer flavoprotein‑quinone oxidoreductase YdiS |
| RA | 1,783,814 | G→A | D280N (GAT→AAT) | fadK → | short chain acyl‑CoA synthetase |
| JC JC | 1,792,772 | IS2 (–) +5 bp | intergenic (‑41/+33) | nlpC ← / ← btuD | NlpC/P60 family lipoprotein NlpC/vitamin B12 ABC transporter ATP binding subunit |
| RA | 1,814,782 | G→A | E306K (GAA→AAA) | katE → | catalase HPII |
| RA | 1,831,079 | G→A | P302S (CCA→TCA) | astC ← | succinylornithine transaminase |
| RA | 1,837,466 | G→A | W85* (TGG→TGA) | ynjC → | putative ABC transporter membrane subunit YnjC |
| RA | 1,849,728 | G→A | E298K (GAA→AAA) | sppA → | protease IV, a signal peptide peptidase |
| RA | 1,849,860 | G→A | E342K (GAA→AAA) | sppA → | protease IV, a signal peptide peptidase |
| RA | 1,860,094 | G→A | L46F (CTC→TTC) | ydjK ← | putative transporter YdjK |
| RA | 1,863,734 | G→A | V322I (GTT→ATT) | gapA → | glyceraldehyde‑3‑phosphate dehydrogenase A |
| RA | 1,869,994 | G→A | G347D (GGC→GAC) | yeaH → | DUF444 domain‑containing protein YeaH |
| RA | 1,872,813 | G→A | W258* (TGG→TAG) | dgcJ → | diguanylate cyclase DgcJ |
| RA | 1,873,439 | G→A | A467T (GCG→ACG) | dgcJ → | diguanylate cyclase DgcJ |
| RA | 1,873,865 | G→A | E98K (GAA→AAA) | yeaK → | mischarged aminoacyl‑tRNA deacylase |
| RA | 1,889,610 | C→T | G46E (GGG→GAG) | fadD ← | long‑chain‑fatty‑acid‑‑CoA ligase |
| RA | 1,894,170 | G→A | G13D (GGT→GAT) | yoaC → | DUF1889 domain‑containing protein YoaC |
| RA | 1,956,470 | C→T | A180T (GCA→ACA) | torZ ← | trimethylamine N‑oxide reductase 2 |
| RA | 1,978,243 | G→T | intergenic (‑46/+275) | flhD ← / ← insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB |
| RA | 1,984,291 | C→T | R260H (CGC→CAC) | araG ← | arabinose ABC transporter ATP binding subunit |
| RA | 1,990,161 | C→T | L161L (CTG→TTG) | tyrP → | tyrosine:H(+) symporter |
| RA | 1,994,050 | C→T | Q219Q (CAG→CAA) | uvrC ← | UvrABC excision nuclease subunit C |
| RA | 2,003,264 | C→T | E115K (GAA→AAA) | fliC ← | flagellar filament structural protein |
| RA | 2,009,059 | C→T | I261I (ATC→ATT) | yedE → | putative selenium transporter YedE |
| RA | 2,019,834 | C→T | L73F (CTT→TTT) | fliL → | flagellar protein FliL |
| RA | 2,032,423 | G→A | V219V (GTC→GTT) | yedJ ← | putative HD superfamily phosphohydrolase YedJ |
| RA | 2,035,891 | C→T | F19F (TTC→TTT) | hchA → | protein/nucleic acid deglycase 1 |
| RA | 2,126,536 | C→T | A219T (GCG→ACG) | fcl ← | GDP‑L‑fucose synthase |
| RA | 2,159,473 | C→T | A363V (GCC→GTC) | mdtC → | multidrug efflux pump RND permease subunit MdtC |
| RA | 2,166,682 | C→T | L339L (CTG→TTG) | trhP → | tRNA wobble base hydroxylation protein TrhP |
| RA | 2,170,027 | C→T | pseudogene (141/475 nt) | gatR ← | DNA‑binding transcriptional repressor GatR, N‑terminal fragment |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,176,651 | C→T | S185N (AGC→AAC) | gatY ← | tagatose‑1,6‑bisphosphate aldolase 2 |
| RA | 2,176,721 | C→T | E162K (GAA→AAA) | gatY ← | tagatose‑1,6‑bisphosphate aldolase 2 |
| RA | 2,177,055 | C→T | T50T (ACG→ACA) | gatY ← | tagatose‑1,6‑bisphosphate aldolase 2 |
| RA | 2,199,572 | C→T | intergenic (+2274/‑707) | yehF → / → yehI | PF05406 family protein YehF/DUF4132 domain‑containing protein YehI |
| RA | 2,205,728 | C→T | H12Y (CAT→TAT) | yehM → | uncharacterized protein YehM |
| RA | 2,206,946 | C→T | P418S (CCT→TCT) | yehM → | uncharacterized protein YehM |
| RA | 2,208,284 | C→T | D106D (GAC→GAT) | yehP → | VWA domain‑containing protein YehP |
| RA | 2,210,242 | C→T | N381N (AAC→AAT) | yehQ → | SWIM zinc finger domains‑containing protein YehQ |
| RA | 2,215,552 | C→T | T229T (ACC→ACT) | mlrA → | DNA‑binding transcriptional activator MlrA |
| RA | 2,218,986 | C→T | A166T (GCA→ACA) | osmF ← | glycine betaine ABC transporter periplasmic binding protein OsmF |
| RA | 2,227,544 | C→T | intergenic (‑274/‑1438) | yohF ← / → yohP | putative oxidoreductase YohF/putative membrane protein YohP |
| RA | 2,228,005 | C→T | intergenic (‑735/‑977) | yohF ← / → yohP | putative oxidoreductase YohF/putative membrane protein YohP |
| RA | 2,233,751 | C→T | P51L (CCC→CTC) | yeiS → | DUF2542 domain‑containing protein YeiS |
| RA | 2,234,001 | C→T | intergenic (+162/‑32) | yeiS → / → preT | DUF2542 domain‑containing protein YeiS/dihydropyrimidine dehydrogenase (NAD(+)) subunit PreT |
| RA | 2,240,166 | C→T | M61I (ATG→ATA) | mglB ← | D‑galactose/methyl‑galactoside ABC transporter periplasmic binding protein |
| RA | 2,247,968 | C→T | G189S (GGC→AGC) | lysP ← | lysine:H(+) symporter |
| RA | 2,253,175 | C→T | G324E (GGA→GAA) | nupX ← | putative nucleoside transporter |
| RA | 2,253,186 | C→T | G320G (GGG→GGA) | nupX ← | putative nucleoside transporter |
| RA | 2,253,230 | C→T | A306T (GCG→ACG) | nupX ← | putative nucleoside transporter |
| RA | 2,254,400 | C→T | D263N (GAC→AAC) | rihB ← | pyrimidine‑specific ribonucleoside hydrolase RihB |
| RA | 2,255,699 | C→T | L115L (CTC→CTT) | yeiL → | DNA‑binding transcriptional activator YeiL |
| RA | 2,256,424 | C→T | P304P (CCG→CCA) | psuT ← | putative pseudouridine transporter |
| RA | 2,257,367 | C→T | intergenic (‑32/+62) | psuT ← / ← psuG | putative pseudouridine transporter/pseudouridine‑5'‑phosphate glycosidase |
| RA | 2,259,431 | C→T | intergenic (‑135/+288) | psuK ← / ← fruA | putative pseudouridine kinase/fructose‑specific PTS multiphosphoryl transfer protein FruA |
| RA | 2,260,379 | C→T | E344E (GAG→GAA) | fruA ← | fructose‑specific PTS multiphosphoryl transfer protein FruA |
| RA | 2,260,455 | C→T | G319D (GGT→GAT) | fruA ← | fructose‑specific PTS multiphosphoryl transfer protein FruA |
| RA | 2,260,796 | C→T | P205P (CCG→CCA) | fruA ← | fructose‑specific PTS multiphosphoryl transfer protein FruA |
| JC JC | 2,269,876 | IS5 (+) +4 bp | intergenic (+309/‑100) | lpxT → / → mepS | lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase |
| RA | 2,291,308 | G→A | intergenic (+161/+50) | narP → / ← ccmH | DNA‑binding transcriptional dual regulator NarP/holocytochrome c synthase CcmH component |
| RA | 2,292,586 | G→A | L127L (CTG→TTG) | ccmG ← | thiol:disulfide oxidoreductase CcmG |
| JC JC | 2,319,850 | IS2 (+) +5 bp | coding (23‑27/2850 nt) | rcsC ← | histidine kinase RcsC |
| RA | 2,320,632 | C→T | T197I (ACC→ATC) | atoS → | sensor histidine kinase AtoS |
| RA | 2,331,733 | G→A | intergenic (‑1936/+2603) | yfaQ ← / ← yfaT | tandem DUF2300 domain‑containing protein YfaQ/DUF1175 domain‑containing protein YfaT |
| RA | 2,332,012 | G→A | intergenic (‑2215/+2324) | yfaQ ← / ← yfaT | tandem DUF2300 domain‑containing protein YfaQ/DUF1175 domain‑containing protein YfaT |
| RA | 2,335,259 | G→A | D462D (GAC→GAT) | yfaA ← | DUF2138 domain‑containing protein YfaA |
| RA | 2,338,695 | G→A | I242I (ATC→ATT) | gyrA ← | DNA gyrase subunit A |
| RA | 2,340,254 | G→A | D230N (GAT→AAT) | ubiG → | bifunctional 3‑demethylubiquinone‑8 3‑O‑methyltransferase and 2‑octaprenyl‑6‑hydroxyphenol methylase |
| RA | 2,397,444 | G→A | Q908* (CAA→TAA) | nuoG ← | NADH:quinone oxidoreductase subunit G |
| JC JC | 2,406,780 | IS1 (–) +8 bp | intergenic (‑139/‑774) | lrhA ← / → alaA | DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA |
| MC JC | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| RA | 2,565,649 | G→A | D412D (GAC→GAT) | eutA ← | ethanolamine ammonia‑lyase reactivase EutA |
| RA | 2,829,251 | C→T | H69Y (CAT→TAT) | srlR → | DNA‑binding transcriptional repressor SrlR |
| RA | 3,007,245 | G→A | M328I (ATG→ATA) | ygeW → | putative carbamoyltransferase YgeW |
| RA | 3,268,970 | A→G | T186A (ACA→GCA) | yhaC → | uncharacterized protein YhaC |
| RA | 3,385,165 | G→A | E155K (GAG→AAG) | argR → | DNA‑binding transcriptional dual regulator ArgR |
| RA | 3,486,205 | C→A | T29K (ACG→AAG) | crp → | DNA‑binding transcriptional dual regulator CRP |
| RA | 3,486,828 | C→T | P13L (CCC→CTC) | yhfK → | putative transporter YhfK |
| RA | 3,486,835 | C→T | I15I (ATC→ATT) | yhfK → | putative transporter YhfK |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,647,011 | C→T | T238I (ACC→ATC) | gor → | glutathione reductase (NADPH) |
| MC JC | 3,682,261 | Δ34 bp | coding (1154‑1187/1287 nt) | dctA ← | C4 dicarboxylate/orotate:H(+) symporter |
| JC JC | 3,737,137 | IS2 (+) +5 bp | coding (37‑41/825 nt) | bax ← | putative glycoside hydrolase Bax |
| RA | 3,750,191 | C→T | R36W (CGG→TGG) | sgbE → | L‑ribulose‑5‑phosphate 4‑epimerase SgbE |
| RA | 3,823,908 | C→T | I503I (ATC→ATT) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| RA | 3,824,748 | C→T | T78T (ACC→ACT) | trmH → | tRNA (Gm18) 2'‑O‑methyltransferase |
| RA | 3,837,511 | C→T | L187L (CTG→TTG) | setC → | putative arabinose exporter |
| RA | 3,841,368 | C→T | G124G (GGG→GGA) | nepI ← | purine ribonucleoside exporter |
| RA | 3,843,551 | C→T | G80E (GGG→GAG) | adeQ ← | adenine transporter |
| RA | 3,844,769 | C→T | P269L (CCG→CTG) | adeD → | adenine deaminase |
| RA | 3,850,898 | C→T | M65I (ATG→ATA) | ilvN ← | acetohydroxy acid synthase I subunit IlvN |
| RA | 3,856,378 | C→T | intergenic (‑71/‑37) | yidH ← / → yidI | DUF202 domain‑containing inner membrane protein YidH/putative inner membrane protein YidI |
| RA | 3,861,253 | C→T | intergenic (+77/+734) | yidL → / ← glvB | putative DNA‑binding transcriptional regulator YidL/putative PTS enzyme II component GlvB |
| RA | 3,867,345 | G→A | N26N (AAC→AAT) | ibpA ← | small heat shock protein IbpA |
| RA | 3,870,698 | C→T | A345T (GCG→ACG) | dgoT ← | D‑galactonate:H(+) symporter |
| RA | 3,876,172 | C→T | A261T (GCG→ACG) | yidA ← | sugar phosphatase YidA |
| RA | 3,880,897 | C→T | A109T (GCG→ACG) | recF ← | recombination mediator protein RecF |
| RA | 3,885,855 | C→T | F260F (TTC→TTT) | yidC → | membrane protein insertase YidC |
| RA | 3,887,376 | C→T | F183F (TTC→TTT) | mnmE → | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit |
| RA | 3,919,455 | C→T | G135S (GGC→AGC) | atpA ← | ATP synthase F1 complex subunit alpha |
| RA | 3,929,123 | C→T | E161K (GAA→AAA) | viaA ← | protein ViaA |
| RA | 3,937,092 | C→T | T272I (ACC→ATC) noncoding (48/234 nt) |
rbsB → rbsZ → |
ribose ABC transporter periplasmic binding protein small regulatory RNA RbsZ |
| RA | 3,953,258 | G→A | A259T (GCG→ACG) | ilvE → | branched‑chain‑amino‑acid aminotransferase |
| RA | 3,956,510 | G→A | E394K (GAA→AAA) | ilvA → | threonine deaminase |
| RA | 3,957,435 | G→A | A129V (GCG→GTG) | ilvY ← | DNA‑binding transcriptional dual regulator IlvY |
| RA | 3,958,012 | G→A | A15T (GCA→ACA) | ilvC → | ketol‑acid reductoisomerase (NADP(+)) |
| RA | 3,961,182 | G→A | G169E (GGG→GAG) | rep → | ATP‑dependent DNA helicase Rep |
| RA | 3,971,449 | G→A | G64S (GGC→AGC) | wecC → | UDP‑N‑acetyl‑D‑mannosamine dehydrogenase |
| RA | 3,975,714 | G→A | G190D (GGC→GAC) | wecE → | dTDP‑4‑dehydro‑6‑deoxy‑D‑glucose transaminase |
| RA | 3,979,532 | G→A | S311N (AGT→AAT) | wzyE → | enterobacterial common antigen polymerase |
| RA | 3,979,634 | G→A | G345D (GGC→GAC) | wzyE → | enterobacterial common antigen polymerase |
| RA | 4,003,017 | C→T | M59I (ATG→ATA) | yigG ← | inner membrane protein |
| RA | 4,050,689 | C→T | G26E (GGA→GAA) | yihA ← | GTP‑binding protein YihA |
| RA | 4,052,851 | C→T | I269I (ATC→ATT) | hemN → | coproporphyrinogen III dehydrogenase |
| RA | 4,072,023 | G→A | A210V (GCT→GTT) | yihT ← | 6‑deoxy‑6‑sulfofructose‑1‑phosphate aldolase |
| RA | 4,076,209 | C→T | L22L (CTA→TTA) | yihY → | PF03631 family membrane protein YihY |
| JC JC | 4,123,923 | IS2 (–) +5 bp | coding (530‑534/1026 nt) | cytR ← | DNA‑binding transcriptional repressor CytR |
| RA | 4,146,389 | (T)6→7 | coding (132/879 nt) | pflC → | putative pyruvate formate‑lyase 2 activating enzyme PflC |
| RA | 4,152,036 | G→A | P355S (CCG→TCG) | ppc ← | phosphoenolpyruvate carboxylase |
| RA | 4,182,549 | C→T | I435I (ATC→ATT) | rpoB → | RNA polymerase subunit beta |
| RA | 4,189,936 | C→T | L51F (CTT→TTT) | yjaZ → | protein YjaZ |
| RA | 4,195,326 | C→T | W258* (TGG→TGA) | thiC ← | phosphomethylpyrimidine synthase |
| RA | 4,345,258 | C→T | D101N (GAC→AAC) | yjdF ← | DUF2238 domain‑containing inner membrane protein YjdF |
| RA | 4,410,960 | G→A | E136E (GAG→GAA) | yjfJ → | PspA family protein YjfJ |
| RA | 4,411,873 | C→T | S191F (TCT→TTT) | yjfK → | DUF2491 domain‑containing protein YjfK |
| RA | 4,512,917 | C→T | G165S (GGC→AGC) | fecC ← | ferric citrate ABC transporter membrane subunit FecC |
| RA | 4,542,683 | Δ1 bp | intergenic (+50/‑432) | fimE → / → fimA | regulator for fimA/type 1 fimbriae major subunit |
| MC JC | 4,549,192 | Δ39 bp | coding (385‑423/903 nt) | fimH → | type 1 fimbriae D‑mannose specific adhesin |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 113753 | 113876 | 124 | 2 [1] | [1] 2 | guaC | GMP reductase |
| * | * | ÷ | NC_000913 | 164531 | 164632 | 102 | 2 [1] | [1] 2 | [hrpB] | [hrpB] |
| * | * | ÷ | NC_000913 | 177214 | 177315 | 102 | 3 [1] | [1] 2 | yadS | PF03458 family protein YadS |
| * | * | ÷ | NC_000913 | 221397 | 221501 | 105 | 2 [1] | [1] 2 | metI | L‑methionine/D‑methionine ABC transporter membrane subunit |
| * | * | ÷ | NC_000913 | 238236 | 238337 | 102 | 2 [1] | [1] 2 | [ykfM] | [ykfM] |
| * | * | ÷ | NC_000913 | 289251 | 289313 | 63 | 2 [1] | [1] 2 | [argF] | [argF] |
| * | * | ÷ | NC_000913 | 330932 | 331059 | 128 | 2 [1] | [1] 2 | betT | choline:H(+) symporter |
| * | * | ÷ | NC_000913 | 388691 | 388704 | 14 | 2 [1] | [1] 2 | tauD/hemB | taurine dioxygenase/porphobilinogen synthase |
| * | * | ÷ | NC_000913 | 406523 | 406713 | 191 | 2 [1] | [1] 2 | aroL | shikimate kinase 2 |
| * | * | ÷ | NC_000913 | 421904 | 421993 | 90 | 2 [1] | [1] 2 | proY | putative transporter ProY |
| * | * | ÷ | NC_000913 | 442192 | 442202 | 11 | 2 [0] | [1] 2 | thiI | tRNA uridine 4‑sulfurtransferase |
| * | * | ÷ | NC_000913 | 459112 | 459170 | 59 | 4 [1] | [0] 2 | lon | Lon protease |
| * | * | ÷ | NC_000913 | 488196 | 488239 | 44 | 2 [0] | [1] 2 | mscK | potassium dependent, small conductance mechanosensitive channel |
| * | * | ÷ | NC_000913 | 497782 | 497844 | 63 | 2 [1] | [1] 2 | [adk] | [adk] |
| * | * | ÷ | NC_000913 | 628788 | 628822 | 35 | 3 [1] | [1] 2 | entA | 2,3‑dihydro‑2,3‑dihydroxybenzoate dehydrogenase |
| * | * | ÷ | NC_000913 | 630491 | 630569 | 79 | 2 [1] | [1] 2 | cstA | pyruvate transporter CstA |
| * | * | ÷ | NC_000913 | 641180 | 641376 | 197 | 2 [1] | [1] 2 | [ahpF] | [ahpF] |
| * | * | ÷ | NC_000913 | 645217 | 645363 | 147 | 2 [1] | [1] 2 | citT | citrate:succinate antiporter |
| * | * | ÷ | NC_000913 | 753712 | 753717 | 6 | 2 [1] | [0] 2 | gltA | citrate synthase |
| * | * | ÷ | NC_000913 | 766668 | 766744 | 77 | 2 [1] | [1] 2 | mngA | 2‑O‑alpha‑mannosyl‑D‑glycerate specific PTS enzyme II |
| * | * | ÷ | NC_000913 | 807277 | 807363 | 87 | 3 [1] | [1] 2 | [ybhC] | [ybhC] |
| * | * | ÷ | NC_000913 | 814833 | 814841 | 9 | 2 [1] | [1] 2 | uvrB | UvrABC excision nuclease subunit B |
| * | * | ÷ | NC_000913 | 844951 | 845137 | 187 | 2 [1] | [1] 2 | ybiO | moderate conductance mechanosensitive channel YbiO |
| * | * | ÷ | NC_000913 | 847826 | 847968 | 143 | 2 [1] | [1] 2 | glnH | L‑glutamine ABC transporter periplasmic binding protein |
| * | * | ÷ | NC_000913 | 858486 | 858628 | 143 | 2 [1] | [1] 2 | ybiU | DUF1479 domain‑containing protein YbiU |
| * | * | ÷ | NC_000913 | 895198 | 895326 | 129 | 2 [1] | [1] 2 | potG | putrescine ABC transporter ATP binding subunit |
| * | * | ÷ | NC_000913 | 907522 | 907550 | 29 | 2 [1] | [1] 2 | ybjT | putative NAD(P)‑binding protein YbjT |
| * | * | ÷ | NC_000913 | 913108 | 913198 | 91 | 2 [1] | [1] 2 | hcp | protein S‑nitrosylase |
| * | * | ÷ | NC_000913 | 987419 | 987503 | 85 | 2 [1] | [1] 2 | ompF/asnS | outer membrane porin F/asparagine‑‑tRNA ligase |
| * | * | ÷ | NC_000913 | 994346 | 994510 | 165 | 2 [1] | [1] 2 | ssuC | aliphatic sulfonate ABC transporter membrane subunit |
| * | * | ÷ | NC_000913 | 1005113 | 1005152 | 40 | 3 [1] | [1] 2 | pyrD | dihydroorotate dehydrogenase, type 2 |
| * | * | ÷ | NC_000913 | 1012386 | 1012416 | 31 | 3 [1] | [1] 2 | pqiA | intermembrane transport protein PqiA |
| * | * | ÷ | NC_000913 | 1065176 | 1065234 | 59 | 2 [1] | [1] 2 | yccE | uncharacterized protein YccE |
| * | * | ÷ | NC_000913 | 1168776 | 1168833 | 58 | 2 [0] | [1] 2 | [comR] | [comR] |
| * | * | ÷ | NC_000913 | 1186967 | 1187063 | 97 | 2 [1] | [1] 2 | pepT | peptidase T |
| * | * | ÷ | NC_000913 | 1192460 | 1192473 | 14 | 2 [1] | [1] 2 | hflD | lysogenization regulator |
| * | * | ÷ | NC_000913 | 1196245 | 1211513 | 15269 | 2 [1] | [0] 2 | [icd]–mcrA | [icd],C0293,ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA |
| * | * | ÷ | NC_000913 | 1211852 | 1211885 | 34 | 2 [0] | [1] 2 | iraM | anti‑adaptor protein IraM |
| * | * | ÷ | NC_000913 | 1231687 | 1231806 | 120 | 2 [1] | [1] 3 | umuC | DNA polymerase V catalytic protein |
| * | * | ÷ | NC_000913 | 1275694 | 1275824 | 131 | 2 [1] | [1] 2 | narL | DNA‑binding transcriptional dual regulator NarL |
| * | * | ÷ | NC_000913 | 1299388 | 1300869 | 1482 | 2 [1] | [1] 3 | insH21 | insH21 |
| * | * | ÷ | NC_000913 | 1313636 | 1313711 | 76 | 2 [1] | [1] 2 | [yciC] | [yciC] |
| * | * | ÷ | NC_000913 | 1331514 | 1331586 | 73 | 2 [1] | [1] 3 | topA | DNA topoisomerase 1 |
| * | * | ÷ | NC_000913 | 1346211 | 1346260 | 50 | 2 [0] | [1] 2 | pdeR | cyclic di‑GMP phosphodiesterase PdeR |
| * | * | ÷ | NC_000913 | 1349709 | 1349888 | 180 | 2 [1] | [1] 2 | yciW | putative peroxidase YciW |
| * | * | ÷ | NC_000913 | 1351195 | 1351365 | 171 | 2 [1] | [1] 2 | fabI/ycjD | enoyl‑[acyl‑carrier‑protein] reductase/DUF559 domain‑containing protein YcjD |
| * | * | ÷ | NC_000913 | 1355696 | 1355766 | 71 | 2 [1] | [1] 4 | sapA | putative periplasmic binding protein SapA |
| * | * | ÷ | NC_000913 | 1359707 | 1359757 | 51 | 2 [1] | [0] 2 | puuA | glutamate‑putrescine ligase |
| * | * | ÷ | NC_000913 | 1359813 | 1359818 | 6 | 2 [1] | [0] 2 | puuA | glutamate‑putrescine ligase |
| * | * | ÷ | NC_000913 | 1416978 | 1417113 | 136 | 2 [1] | [1] 2 | recE | exonuclease VIII, ds DNA exonuclease, 5' ‑‑> 3' specific |
| * | * | ÷ | NC_000913 | 1420028 | 1420038 | 11 | 2 [0] | [1] 2 | racR | DNA‑binding transcriptional repressor RacR |
| * | * | ÷ | NC_000913 | 1485770 | 1485845 | 76 | 2 [1] | [1] 2 | hrpA | ATP‑dependent 3'‑>5' RNA helicase HrpA |
| * | * | ÷ | NC_000913 | 1518023 | 1518149 | 127 | 2 [1] | [1] 2 | ydcZ | putative inner membrane protein YdcZ |
| * | * | ÷ | NC_000913 | 1519911 | 1520054 | 144 | 2 [1] | [1] 2 | curA | NADPH‑dependent curcumin/dihydrocurcumin reductase |
| * | * | ÷ | NC_000913 | 1581792 | 1581941 | 150 | 2 [1] | [1] 2 | ydeN | putative sulfatase YdeN |
| * | * | ÷ | NC_000913 | 1598766 | 1598794 | 29 | 2 [1] | [0] 2 | lsrK | autoinducer‑2 kinase |
| * | * | ÷ | NC_000913 | 1608719 | 1608723 | 5 | 2 [0] | [1] 2 | yneE | PF01062 family inner membrane protein YneE |
| * | * | ÷ | NC_000913 | 1626287 | 1626445 | 159 | 2 [1] | [1] 3 | dcp | peptidyl‑dipeptidase Dcp |
| * | * | ÷ | NC_000913 | 1650218 | 1650372 | 155 | 2 [1] | [1] 2 | ydfD/ynfP | lysis protein/protein YnfP |
| * | * | ÷ | NC_000913 | 1715224 | 1715323 | 100 | 2 [1] | [1] 3 | pdxY | pyridoxal kinase 2 |
| * | * | ÷ | NC_000913 | 1720972 | 1721039 | 68 | 2 [1] | [1] 3 | [ydhI] | [ydhI] |
| * | * | ÷ | NC_000913 | 1749602 | 1749669 | 68 | 2 [1] | [1] 2 | ydhU | putative cytochrome YdhU |
| * | * | ÷ | NC_000913 | 1823861 | 1823948 | 88 | 2 [1] | [1] 2 | cho | excinuclease Cho |
| * | * | ÷ | NC_000913 | 1844858 | 1844931 | 74 | 3 [1] | [1] 2 | [ynjI] | [ynjI] |
| * | * | ÷ | NC_000913 | 1941069 | 1941187 | 119 | 2 [1] | [1] 2 | mepM | peptidoglycan endopeptidase MepM |
| * | * | ÷ | NC_000913 | 1961968 | 1961999 | 32 | 2 [1] | [1] 3 | [yecT] | [yecT] |
| * | * | ÷ | NC_000913 | 1963833 | 1963903 | 71 | 2 [1] | [1] 3 | flhA | flagellar biosynthesis protein FlhA |
| * | * | ÷ | NC_000913 | 1978495 | 1979270 | 776 | 11 [0] | [0] 5 | insB5–insA5 | insB5,insA5 |
| * | * | ÷ | NC_000913 | 1995522 | 1995540 | 19 | 2 [1] | [1] 2 | uvrY/yecU | DNA‑binding transcriptional activator UvrY/protein YecU |
| * | * | ÷ | NC_000913 | 2005352 | 2005393 | 42 | 2 [1] | [1] 2 | fliS | flagellar biosynthesis protein FliS |
| * | * | ÷ | NC_000913 | 2100805 | 2100865 | 61 | 2 [1] | [1] 2 | gnd | 6‑phosphogluconate dehydrogenase, decarboxylating |
| * | * | ÷ | NC_000913 | 2109370 | 2109416 | 47 | 3 [1] | [0] 3 | rfbX | polyisoprenol‑linked O16‑antigen repeat unit flippase |
| * | * | ÷ | NC_000913 | 2184652 | 2184757 | 106 | 2 [1] | [0] 2 | thiM | hydroxyethylthiazole kinase |
| * | * | ÷ | NC_000913 | 2245179 | 2245231 | 53 | 2 [1] | [1] 2 | cirA | iron‑catecholate outer membrane transporter CirA |
| * | * | ÷ | NC_000913 | 2280899 | 2281105 | 207 | 2 [1] | [1] 2 | radD | putative DNA repair helicase RadD |
| * | * | ÷ | NC_000913 | 2305365 | 2305391 | 27 | 2 [1] | [1] 2 | mqo | malate:quinone oxidoreductase |
| * | * | ÷ | NC_000913 | 2328057 | 2328124 | 68 | 2 [1] | [1] 2 | yfaP | DUF2135 domain‑containing protein YfaP |
| * | * | ÷ | NC_000913 | 2332518 | 2332661 | 144 | 2 [1] | [1] 2 | yfaQ/yfaT | tandem DUF2300 domain‑containing protein YfaQ/DUF1175 domain‑containing protein YfaT |
| * | * | ÷ | NC_000913 | 2383936 | 2383988 | 53 | 2 [1] | [1] 2 | elaD/yfbK | protease ElaD/IPR002035/DUF3520 domain‑containing protein YfbK |
| * | * | ÷ | NC_000913 | 2396662 | 2396724 | 63 | 2 [1] | [1] 2 | nuoH | NADH:quinone oxidoreductase subunit H |
| * | * | ÷ | NC_000913 | 2404882 | 2404956 | 75 | 2 [1] | [1] 2 | nuoA | NADH:quinone oxidoreductase subunit A |
| * | * | ÷ | NC_000913 | 2411887 | 2411930 | 44 | 2 [1] | [1] 2 | hxpA | hexitol phosphatase A |
| * | * | ÷ | NC_000913 | 2419428 | 2419630 | 203 | 2 [1] | [1] 2 | yfcE | phosphodiesterase YfcE |
| * | * | ÷ | NC_000913 | 2437983 | 2438121 | 139 | 2 [1] | [1] 2 | flk | putative flagella assembly protein |
| * | * | ÷ | NC_000913 | 2469345 | 2469467 | 123 | 2 [1] | [1] 2 | yfdI | serotype‑specific glucosyl transferase YfdI |
| * | * | ÷ | NC_000913 | 2506805 | 2506836 | 32 | 2 [1] | [1] 2 | fryC | putative PTS enzyme IIC component FryC |
| * | * | ÷ | NC_000913 | 2594741 | 2594789 | 49 | 2 [1] | [1] 2 | tmcA | tRNA(Met) cytidine acetyltransferase |
| * | * | ÷ | NC_000913 | 2636154 | 2636164 | 11 | 2 [1] | [0] 2 | der | 50S ribosomal subunit stability factor |
| * | * | ÷ | NC_000913 | 2682101 | 2682173 | 73 | 2 [1] | [1] 2 | yphG | DUF5107 domain‑containing protein YphG |
| * | * | ÷ | NC_000913 | 2905607 | 2905676 | 70 | 2 [1] | [1] 2 | yqcG | cell envelope stress response protein YqcG |
| * | * | ÷ | NC_000913 | 2966381 | 2966493 | 113 | 2 [1] | [1] 2 | ptsP | phosphoenolpyruvate‑protein phosphotransferase PtsP |
| * | * | ÷ | NC_000913 | 3019481 | 3019539 | 59 | 2 [1] | [1] 2 | ssnA | putative aminohydrolase SsnA |
| * | * | ÷ | NC_000913 | 3035413 | 3035477 | 65 | 2 [1] | [1] 2 | prfB | peptide chain release factor RF2 |
| * | * | ÷ | NC_000913 | 3045982 | 3046060 | 79 | 2 [1] | [1] 2 | ygfF/gcvP | putative oxidoreductase YgfF/glycine decarboxylase |
| * | * | ÷ | NC_000913 | 3239505 | 3239707 | 203 | 2 [1] | [1] 2 | [alx] | [alx] |
| * | * | ÷ | NC_000913 | 3364895 | 3364919 | 25 | 2 [1] | [1] 2 | yhcD | putative fimbrial usher protein YhcD |
| * | * | ÷ | NC_000913 | 3406845 | 3406868 | 24 | 2 [1] | [1] 2 | accC | biotin carboxylase |
| * | * | ÷ | NC_000913 | 3417149 | 3417277 | 129 | 4 [1] | [1] 3 | acrF | multidrug efflux pump RND permease AcrF |
| * | * | ÷ | NC_000913 | 3423825–3424233 | 3424468–3424240 | 8–644 | 2 [1] | [1] 2 | [rrlD] | [rrlD] |
| * | * | ÷ | NC_000913 | 3458892 | 3458935 | 44 | 2 [0] | [1] 2 | gspE | Type II secretion system protein GspE |
| * | * | ÷ | NC_000913 | 3504885 | 3504905 | 21 | 3 [1] | [1] 2 | frlR/yhfS | DNA‑binding transcriptional regulator FrlR/putative aminotransferase YhfS |
| * | * | ÷ | NC_000913 | 3608405 | 3608434 | 30 | 2 [0] | [1] 2 | zntA | Zn(2(+))/Cd(2(+))/Pb(2(+)) exporting P‑type ATPase |
| * | * | ÷ | NC_000913 | 3781022 | 3781151 | 130 | 2 [1] | [1] 2 | lldD/trmL | L‑lactate dehydrogenase/tRNA (cytidine/uridine‑2'‑O)‑ribose methyltransferase |
| * | * | ÷ | NC_000913 | 3797146 | 3797162 | 17 | 2 [1] | [1] 2 | waaL | O‑antigen ligase |
| * | * | ÷ | NC_000913 | 3926307 | 3926414 | 108 | 2 [1] | [1] 2 | mioC | flavoprotein MioC |
| * | * | ÷ | NC_000913 | 3959932 | 3959948 | 17 | 2 [0] | [1] 2 | ppiC/rep | peptidyl‑prolyl cis‑trans isomerase C/ATP‑dependent DNA helicase Rep |
| * | * | ÷ | NC_000913 | 3986441 | 3986461 | 21 | 2 [1] | [0] 2 | glmZ | small regulatory RNA GlmZ |
| * | * | ÷ | NC_000913 | 4065992 | 4066071 | 80 | 2 [0] | [1] 2 | yihP | putative 2,3‑dihydroxypropane‑1‑sulfonate export protein |
| * | * | ÷ | NC_000913 | 4070336 | 4070531 | 196 | 2 [1] | [1] 2 | [yihR]–[yihS] | [yihR],[yihS] |
| * | * | ÷ | NC_000913 | 4174025 | 4174142 | 118 | 2 [1] | [1] 2 | [birA]–[coaA] | [birA],[coaA] |
| * | * | ÷ | NC_000913 | 4224828 | 4224925 | 98 | 2 [1] | [1] 2 | metH | cobalamin‑dependent methionine synthase |
| * | * | ÷ | NC_000913 | 4248150 | 4248206 | 57 | 2 [1] | [1] 2 | lamB | maltose outer membrane channel/phage lambda receptor protein |
| * | * | ÷ | NC_000913 | 4494614 | 4494679 | 66 | 2 [1] | [1] 2 | [idnK] | [idnK] |
| * | * | ÷ | NC_000913 | 4549834 | 4549934 | 101 | 2 [1] | [1] 2 | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 279163 = | NA (NA) | 11 (1.340) | 8/334 | 0.1 | 91.7% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 2666074 = | 1 (0.120) | coding (640/1281 nt) | csiE | stationary phase‑inducible protein CsiE | |||||
| * | ? | NC_000913 | = 1397238 | NA (NA) | 11 (1.340) | 10/334 | 0.0 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1978494 | 0 (0.000) | intergenic (‑297/+24) | flhD/insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB | |||||
| * | ? | NC_000913 | 1979271 = | 0 (0.000) | 5 (0.610) | 4/334 | 0.4 | 100% | intergenic (‑56/‑482) | insA5/uspC | IS1 family protein InsA/universal stress protein C |
| ? | NC_000913 | = 2102947 | NA (NA) | pseudogene (443/446 nt) | wbbL | interrupted rhamnosyltransferase WbbL | |||||
| * | ? | NC_000913 | 2288919 = | NA (NA) | 12 (1.470) | 9/332 | 0.0 | 92.3% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 4536236 = | 1 (0.120) | intergenic (‑2183/‑361) | topAI/ythB | toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/protein YthB | |||||
| * | ? | NC_000913 | 4135180 = | 3 (0.370) | 11 (1.340) | 6/334 | 0.2 | 78.6% | coding (1346/2181 nt) | katG | catalase/hydroperoxidase HPI |
| ? | NC_000913 | 4498181 = | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||