| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,260,379 | C→T | E344E (GAG→GAA) | fruA ← | fructose‑specific PTS multiphosphoryl transfer protein FruA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,260,379 | 0 | C | T | 88.9% | 17.9 / ‑6.2 | 9 | E344E (GAG→GAA) | fruA | fructose‑specific PTS multiphosphoryl transfer protein FruA |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (6/2); minor base A (1/0); total (7/2) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTCAGCAGACCCACACCGAATGCGTACGCTGCTTTGTTTACCGGACCGCCCATGTCAGTACACATCATGCCACCGAGGATCGCCCCCAGCAGAACCGCATTCGCAGTCCCCATGGTCTGCAGCCAGTGAGTCAGCCCTTCGAGAATGCCAGCAACTGGTTTACCGATCAGGTAGATCATCGCCAGACCGACCACCAGACTGGAAATTAGCGGAATGATCAGGATCGGTTTCAGCGCCTCCATACTCTGTGGCAGTTTCAATTGCGTACTGATTAACTTCGCAATGTAACCAGCCAGGAAGCCCGCAATAATACCACCAATGAAGCCAGAACCGGTGCTGACCGCCAGCATACCGCCAATCAGACCCGGAGTGAGGCCCGGACGATCGGCAATGGAAAAGGCAATATAACCTGCCAGTACCGGCACCATCAGCGCAAAGGCTGAACCACCACCAATCTG > NC_000913/2260143‑2260600 | cTCAGCAGACCCACACCGAATGCGTACGCTGCTTTGTTTACCGGACCGCCCATGTCGATACACATTATGCCAAAGAGGCTCGCCCCCAGGAGCACCGCATTCGCACTCCCCACGGTCTGCTGCCAGTGAGTCCGCCCTTCGAGAATGCCGGCACCTCATTTACCGATCAGGTAGATCATCGCCAGACCGACCACCGGACTGCCAGTCAGCGGAATGATCAGGATCGACTTCCGCGCATCCATACTCTGTgg > 1:74844/1‑251 (MQ=255) ncccccAGCAGAACCGCATTCGCAGTCCCCATGGTCTGCAGCCAGTGAGTCAGCCCTTCGAGAATGCCAGCAACTGGTTTACCGATCCGGTAGATCATCGCCAGACCGACCACCAGACTGGAAATTAGCGGAATGATCAGGATCGGTTTCAGCGCTTCCATACTCTGTGGCAGTTTCAATTGCGTACTGATTAACTTCGCAATGTAACCAGCCAGGAAGCCCGCAATAATATCACCAATGAAGCCAGAAcc > 1:31604/2‑251 (MQ=255) cGCATTCGCAGTCCCCATGGTCTGCAGCCAGTGAGTCAGCCCTTCGAGAATGCCAGCCACTGGTTTACCGATCAGGTAGCTCATCGCCAGACCGACCACCAGACTGGAAATTAGCGGAATGATCAGGATCGGTTTCAGCGCTTCCATACTCTGTGGCAGTTTCAATTGCGTACTGATTAACTTCGCAATGTAACCAGCCCGGAAGCCCGCAATAATATCCCCAATGAAGCCAGAACCGGTGCTGACCGcc > 1:71204/1‑250 (MQ=255) cGCAGTCCCCATGGTCTGCAGCCAGTGAGTCAGCCATTCGAGAATGCCAGCAACTGGTTTACCGATCAGGTAGATCATCGCCAGACCGACCACCAGACTGGAAATTAGCGGAATGATCAGGATCGGTTTCAGCGCTTCCATACTCTGTGGCAGTTTCAATTGCGTACTGATTACCTTCGCAATGTAACCAGCCAGGAAGCCCGCAATAATATCACCAATGAAGCCAGAACCGGTGCTGACCGCCAGCATAc > 1:107074/1‑251 (MQ=255) cccATGGTCTGCAGCCAGTGAGTCAGCCCTTCGAGAATGCCAGCAACTGGTTTACCGATCAGTTAGATCATCGCCAGACCGACCACCAGACTGGAAATTAGCGGAATGATCAGGATCGGTTTCAGCGCTTCCATACTCTGTTGCAGTTTCAATTGCGTACTGATTAACTTCGCAATGTAACCAGCCAGGAAGCCCGCAATAATCTCCCCAAAGAAGCCAGCACCGGTTCTGCCCGCCAGCCTACCGcccat > 1:13747/1‑248 (MQ=255) catcGCCAGACCGACCAACCGACTGGAAATTAGCGGAATGATCAGGATCGGTTTCAGCGCTTCCATACTCTGTGGCAGTTTCAATTGCGTACTGATTAACTTAGCAATGAAACCAGCCAGGAAGCCCGCAATAATATCACCAATGAAGCCAGAACCGGTGCTGACCGCCAGCATACCGCCAATCAGACCCGGAGTGAGGCCCGGACGATCGGCAATGGAAAAGGCAATATAACCTGCCAGTACCGGCAcc > 1:47065/1‑250 (MQ=255) ggAAATTAGCGGAATGATCAGGATCGGTTTCAGCGCTTCCATACTCTGTGGCAGTTTCAATTGCGTACTGATTAACTTCGCAATGTAACCAGCCAGGAAGCCCGCAATAATATCACCAATGAAGCCAGAACCGGTGCTGACCGCCAGCATACCGCCAATCAGACCCGGAGTGAGGCCCGGACGATCGGCAATGGAAAAGGCAATATAACCTGCCAGTACCGGCACCATCAGCGCAAAGGCTGAaccacc < 1:50400/249‑1 (MQ=255) aGCGGAATGATCAGGATCGGTTTCAGCGCTTCCATACTCTGTGGCAGTTTCAATTGCGTACTGATTAACTTCGCAATGTAACCAGCCAGGAAGCCCGCAATAATATCACCAATGAAGCCAGAACCGGTGCTGACCGCCAGCATACCGCCAATCAGACCCGGAGTGAGGCCCGGACGATCGGCAATGGAAAAGGCAATATAACCTGCCAGTACCGGCACCATCAGCGCAAAGGCTGAACCACCACCAATCTg < 1:137417/251‑1 (MQ=255) tCAGCGCTTCCATACTCTGTGGCAGTTTCAATTGCGTACTGATTAACTTCGCAATGTAACCAGCCAGGAAGCCCGCAATAATATCACCAATGAAGCCAGAACCGGTGCTGACCGCCAg > 1:53065/1‑118 (MQ=255) | CTCAGCAGACCCACACCGAATGCGTACGCTGCTTTGTTTACCGGACCGCCCATGTCAGTACACATCATGCCACCGAGGATCGCCCCCAGCAGAACCGCATTCGCAGTCCCCATGGTCTGCAGCCAGTGAGTCAGCCCTTCGAGAATGCCAGCAACTGGTTTACCGATCAGGTAGATCATCGCCAGACCGACCACCAGACTGGAAATTAGCGGAATGATCAGGATCGGTTTCAGCGCCTCCATACTCTGTGGCAGTTTCAATTGCGTACTGATTAACTTCGCAATGTAACCAGCCAGGAAGCCCGCAATAATACCACCAATGAAGCCAGAACCGGTGCTGACCGCCAGCATACCGCCAATCAGACCCGGAGTGAGGCCCGGACGATCGGCAATGGAAAAGGCAATATAACCTGCCAGTACCGGCACCATCAGCGCAAAGGCTGAACCACCACCAATCTG > NC_000913/2260143‑2260600 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |