| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,919,455 | C→T | G135S (GGC→AGC) | atpA ← | ATP synthase F1 complex subunit alpha |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,919,455 | 0 | C | T | 85.7% | 10.6 / ‑5.3 | 7 | G135S (GGC→AGC) | atpA | ATP synthase F1 complex subunit alpha |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (5/1); total (5/2) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCACGTTAGAAATGGTGGACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCACCCAGAGTGTTAACCACACGGCCCAGCAGGCCACGGCCAACCGGAACTTCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGC > NC_000913/3919233‑3919671 | ccACGTTAGAAATGGTGGACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGATGGTTGATGATGGCATCGATAGCCCGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCTCGGAGCGATTGCTTCt > 1:115978/1‑239 (MQ=255) gcTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCTCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCACCCAGAGTGTTAACCACACGGCCcagc > 1:54512/1‑251 (MQ=255) cGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCTCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCACCCAGAgtg < 1:80818/215‑1 (MQ=255) cAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCTCGGAGCGAtt > 1:62116/1‑106 (MQ=255) naaCGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCTCGGAGCGCTTGCTTCTAca > 1:31019/2‑77 (MQ=255) aNGGNTTTATNACCGNTCTGTACCGGCTGATNTACGGACTGACGTTCGATANNGNCCGGANCGAtt < 2:62116/66‑1 (MQ=255) aCCGGCTGATCTACGGACTGACGTTCGATAACGCTCGGAGCGATTGCTTCTACAGCGGAGAAGCAGTCGGGATCCAGCGGACCTTTACCGTCGATTGGTGCACCCAGAGTGTTAACCACAGGGCCCAGAAGGCCACGGCCAAACGGAACTTCCAGGAAACGCCCAGAACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAgagc > 1:75384/1‑248 (MQ=255) | CCACGTTAGAAATGGTGGACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAACCGGTCTGTACCGGCTGATCTACGGACTGACGTTCGATAACGCCCGGAGCGATTGCTTCTACAGCAGAGAAGCCGTCGTGATCCAGCGGACCTTTACCGTCGATTGGTGCACCCAGAGTGTTAACCACACGGCCCAGCAGGCCACGGCCAACCGGAACTTCCAGGATACGGCCAGTACACTTAACTTTCATGCCTTCGGCAAGGTCAGCGTACGGACCCATAACAACCGCACCTACAGAGTCGCGCTCGAGGTTCAGTGC > NC_000913/3919233‑3919671 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |