mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 34 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,429,160 | 0 | C | G | 61.5% | 6.8 / 12.4 | 13 | L38V (CTG→GTG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,423,338 | 0 | G | C | 61.1% | 2.4 / 18.8 | 18 | intergenic (+26/‑62) | ydaW/rzoR | putative uncharacterized protein YdaW/putative prophage outer membrane lipoprotein RzoR |
| * | NC_000913 | 1,423,272 | 0 | C | T | 60.0% | ‑1.4 / 11.3 | 15 | S174L (TCG→TTG) ‡ | ydaW | putative uncharacterized protein YdaW |
| * | NC_000913 | 1,423,273 | 0 | G | A | 60.0% | ‑1.7 / 10.8 | 15 | S174S (TCG→TCA) ‡ | ydaW | putative uncharacterized protein YdaW |
| * | NC_000913 | 1,423,284 | 0 | A | C | 60.0% | ‑1.6 / 10.7 | 15 | N178T (AAC→ACC) | ydaW | putative uncharacterized protein YdaW |
| * | NC_000913 | 1,634,661 | 0 | C | G | 60.0% | ‑5.4 / 16.0 | 15 | T75T (ACG→ACC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 579,385 | 0 | A | G | 56.2% | 3.2 / 13.3 | 17 | N70N (AAT→AAC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,429,126 | 0 | A | C | 53.3% | ‑5.8 / 11.5 | 15 | A26A (GCA→GCC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,128 | 0 | A | G | 53.3% | ‑0.9 / 11.9 | 15 | K27R (AAA→AGA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 578,574 | 0 | A | C | 50.0% | ‑2.6 / 12.1 | 15 | intergenic (+6/+26) | rzpD/borD | putative prophage endopeptidase RzpD/prophage lipoprotein BorD |
| * | NC_000913 | 579,004 | 0 | C | T | 50.0% | ‑0.5 / 11.7 | 14 | intergenic (‑111/+180) | borD/ybcV | prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,423,244 | 0 | G | C | 50.0% | 8.8 / 16.9 | 14 | V165L (GTG→CTG) | ydaW | putative uncharacterized protein YdaW |
| * | NC_000913 | 1,429,732 | 0 | G | A | 50.0% | ‑6.0 / 12.3 | 14 | K228K (AAG→AAA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,735 | 0 | A | G | 50.0% | 0.3 / 10.1 | 14 | A229A (GCA→GCG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,744 | 0 | T | C | 50.0% | ‑6.4 / 11.0 | 12 | A232A (GCT→GCC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 578,809 | 0 | T | C | 47.4% | ‑2.7 / 15.2 | 19 | T29A (ACA→GCA) | borD | prophage lipoprotein BorD |
| * | NC_000913 | 578,811 | 0 | T | G | 47.4% | 1.2 / 14.5 | 19 | Q28P (CAG→CCG) | borD | prophage lipoprotein BorD |
| * | NC_000913 | 578,605 | 0 | T | G | 47.1% | 0.3 / 18.6 | 17 | K97Q (AAA→CAA) | borD | prophage lipoprotein BorD |
| * | NC_000913 | 1,429,724 | 0 | A | G | 47.1% | ‑5.2 / 16.0 | 17 | T226A (ACC→GCC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,636,503 | 0 | T | C | 46.7% | 4.1 / 13.1 | 15 | intergenic (‑136/‑253) | nohA/ynfO | putative prophage DNA‑packaging protein NohA/DUF3950 domain‑containing protein YnfO |