| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 511,514 | G→A | intergenic (‑135/‑127) | copA ← / → glsA | Cu(+) exporting P‑type ATPase/glutaminase 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 511,514 | 0 | G | A | 87.5% | 10.0 / NA | 8 | intergenic (‑135/‑127) | copA/glsA | Cu(+) exporting P‑type ATPase/glutaminase 1 |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (5/2); minor base C (1/0); total (6/2) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTGACTGGCTGTGATAAAGGTTAAACCTTCCAGCAAGGGGAAGGTCAAGAAATTAATAAACCAGGCGGGTAAAAGTCCGTAAAGATTAAAAAATCGGCTCGATTTGCATCAGGATTAGACATTTATCTCTTTGTTTTCCTGTAGTTAAGTTGCGGGTGCTAAGTTAAATCAGGATGCCTGAAAATCGGCACCGGGGTGAGGAATTACCTCCCGCATCTATAAAAAGGAGTTAACAAAAGATGTTAGATGCAAACAAATTACAGCAGGCAGTGGATCAGGCTTACACCCAATTTCACTCACTTAACGGCGGACAAAATGCCGATTACATTCCCTTTCTGGCGAATGTAC > NC_000913/511289‑511749 | cATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGAACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAACACACTCCTTTAAGACAGTTTTGACTGGCTGTGATAAAGGTTAAACCTTCCAGCAAGGGGAAGGTCAAGCAATTAATAAACCAGGCGGGTAAAAGACCGTAAAGATTAAAAAAACGGCTCGATTTGCATCCGACTTAGACATTTTTCTCTTTGttttt > 1:86636/1‑250 (MQ=255) cAGTGACCGCAGAACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAAACAGTTTTGACTGGATGTGATAAAGGTTAAACCTTCAAGCAAGGGGAAGGTCAAGAAATTAATAAACCAGGCGGGTAAAAATCCGTAAAGATTAAAAAATCGGCTCGATTTGCATCAGAATTAGACATTTATCTCTTTGTTTTCATGTAGTTTAGTTGCGGGTGCTAAGTTAAATCAGGATGCCt > 1:83507/1‑251 (MQ=255) gATAAAGGTTAAACCTTCCAGCAAGGGGAAGGTCAAGAAATTAATAAACCAGGCGGGTAAAAGACCGTAAAGATTAAAAAATCGGCTCGATTTGCATCAGAATTAGa > 1:9177/1‑107 (MQ=255) gTTAAACCTTCCAGCAAGGGGAAGGTCAAGAAATTAATAAACCAGGCGGGTAAAAGTCCGTAAAGATTAAAAAATCGGCTCGATTTGCATCAGAATTAGACATTTATCTCTTTGTTTTCCTGTAGTTAAGTTGNg < 1:131864/135‑1 (MQ=255) ccTTCCAGCAAGGGGAAGGTCAAGAAATTAATAAACCAGGCGGGTAAAAGACCGCAAAGATTACAAAATCGGCTCGATTTGCATCAGCATTAGACATTTATCTCTTTGCTTTCCTGTAGTTAAGTTGCGGGTGCTAAGTTAAATCAGGATGCCTGAAAATCGGCACCGGGGTGAGGCATTACCTCCCGCATCTATAAAAAGGAGTTAACAAAAGATGTTCGATGCAAACAAATTACAgcaggc > 1:115063/1‑243 (MQ=255) aCCAGGCGGGTAAAAGTCCGTAAAGATTAAAAAATCAGCGCGATTTGCATCAGAATTAGACATTTATCTCTTTGTTTTCCTGTAGTTAAGTTGCGGGTGCTAAGTTAAATCAGGATGCCTGAAAATCGGCACCGGGGTGAGGAATTACCTCCCGCATCTATAAAAAGGAGTTAACAAAAGATGTTAGATGCAAACAAATTACAGCAGGCAGGGGATCAGGCTTACACCCAATTTCACTCACTTAAcggcgn < 1:19649/251‑2 (MQ=255) gTAAAAGTCCGTAAAGATTAAAAAATCGGCTCGATTTGCATCAGAATTAGCCATTTATCTCTTTGTTTTCATGTAGTTAAGTTGCGGGTGCTCCGTTCAATCAGGATGCCTGCAAATCGGCACCGGGGTGAGGAATTACCTCCCGcc > 1:75416/1‑146 (MQ=255) cTCGATTTGCATCAGAATTAGACATTTATCTCTTTGTTTTCCTGTAGTTCAGTTGCGGGTGCTAAGATCAATCAGGATGCCTGAAAATCGGCACAGAGGTGAGGAATTACCTCCCGCATATATAAAAAGGAGTTAACAAAAGATGTTAGATGCAAACAAATTACAGCAGGCAGTGGATCAGGCTTACACACAATTTCACTCACTTAACGGCGGACAAAAAGCCGATTACATTCCCTTTCTGGCGAATGTAc > 1:154729/1‑251 (MQ=255) | CATCCGGACGCTGTTCAAGACTTTCTTTCACGCGTTTAACGCAGTGACCGCAGGACAGGCCGTCCAGGGTCAGGTCGATAGTTTGTGACATAAAACACTCCTTTAAGACAGTTTTGACTGGCTGTGATAAAGGTTAAACCTTCCAGCAAGGGGAAGGTCAAGAAATTAATAAACCAGGCGGGTAAAAGTCCGTAAAGATTAAAAAATCGGCTCGATTTGCATCAGGATTAGACATTTATCTCTTTGTTTTCCTGTAGTTAAGTTGCGGGTGCTAAGTTAAATCAGGATGCCTGAAAATCGGCACCGGGGTGAGGAATTACCTCCCGCATCTATAAAAAGGAGTTAACAAAAGATGTTAGATGCAAACAAATTACAGCAGGCAGTGGATCAGGCTTACACCCAATTTCACTCACTTAACGGCGGACAAAATGCCGATTACATTCCCTTTCTGGCGAATGTAC > NC_000913/511289‑511749 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |