| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,345,258 | C→T | D101N (GAC→AAC) | yjdF ← | DUF2238 domain‑containing inner membrane protein YjdF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,345,258 | 0 | C | T | 85.7% | 13.0 / ‑5.8 | 7 | D101N (GAC→AAC) | yjdF | DUF2238 domain‑containing inner membrane protein YjdF |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (5/1); minor base A (1/0); total (6/1) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCGCGCAGAACATATCGGATTGCGTGTCCCACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGACCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATACGGATTACGACTCAACCCCAGCCATTCCTGCACCTCAAAACCAACGGGGACTTTCGCGTAGGTGTATTGTCCGCCGACCATCAGGATGATGGCGTGAAGGAAAATGAGCGTATAGAGCAGCGGCGTTAACGGATAACGTCTGGCGGTGGCAAGCAGTAGCTGCACGACAATAATCACCGGTGTCACTTCCATCAGCCAGGTGAGTTTGTCATGGGCCGAAATGC > NC_000913/4345012‑4345485 | gcgcgcAGCACATATCGGATTGCGTGTCCCACTGGTCTCCCTGGGTGCCGAGAAAAGCATCCGCTTCCTGACCCATTGCCATCGCTGTCCACCACTCGATTAATGCATACATCGCGCTTATCGCCAGCTCCACTCAGCATACCAGGAACGCCGCCAGTTGACGTCCGCTCACGTACATCCCGCGTACGAGAATGTCTCGTGCCACCAGTGCAGTCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTTATAc < 1:148116/251‑1 (MQ=255) tCCCACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCACTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGACCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTTATACGGATTACGACTCAACCCCAGCCATTc > 1:158300/1‑251 (MQ=255) ccGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGACCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTTATACGGATTACGACTCAACCCCAGCCATTCCTGCACCTCACAACCAACggg > 1:28263/1‑251 (MQ=255) cncgCAAGTACATCCAGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCC‑AGCTTGTTATACGGATTACGACTCAACCCCAGCCATTCCTGCACCTCAAAACCAACGGGGACTTTCGCGTAGGTGTATTGTCCGCCGACCATCAGGATGATGGCGTGAAGGAAAATGAGCGTATAGAGCAGCGGCGTTAACGGATAACGTCTGGCGGTGGCAAGCAGTAGCTGCACg > 1:131609/1‑250 (MQ=255) cNCGTACATCCAGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTTATACGGATTACGACTCAACCCCAGCCATTCCTGCACCTCAAAACCAACGGGGACTTTCGCGTAGGTGTATTGTCCGCCGACCATCAGGATGATGGCGTGAAGGAAAATGAGCGTATAGAGCAGCGGCGTTAACGGATAACGTCTGGCGGTGGCAAGCAGTAGCTGCACGACa > 1:132340/1‑250 (MQ=255) tACATCCCGCGAACGAGAATTTCTCGTGCCACCAGCGCAGGAACCAGCCCCTGGAAACAGTGACCCAGCTTGTAATACGGATTACGACTAAACACCAGCAATTCCTGCACCTCAAAACCAACGGGGACTTTCGCGAAGGTGTATTGTCCGCCGACCATCAGGATGATGGCGTGAAGGAAAATGAGCGAATAAAGCAGCGGCGTTAACGGATAACGTCTGGCGGTGGACAGCAGAAGCTGCACGACaataat > 1:150474/1‑251 (MQ=255) cTGGAAAAAGTGCCCCCGCTTGTTATACGGATTACGACTCAACCCCAGCCATTCCTGCACCTCCAAACCAACGGGGACTTTCGCGTAGGTGTATTGTCCGCCGCCCATCAGGATGATGGCGTGCAGGAACATGAGCGTATCGAGCCGCGGCGTTAACGGCTAACGTCTGGCGGTGCCAAGCAGTAGCTGCACGACAATAATCACCGGTGTCACTTCCATCAGCCAGGTGAGTTTGTCCTGGGCCGCAATGc > 1:167415/1‑251 (MQ=255) | GCGCGCAGAACATATCGGATTGCGTGTCCCACTGGTCGCCCTGGGTGCCGAGAAAATCATCCGCTCCCTGACCCATTGCCAGCGCTGCCCACCACTCGATTAATTCATACATCGCGCTTATCGCCAGCGCCACGCAGCAGACCAGGAACGCCACCATTTTACGTCCGCGCACGTACATCCCGCGAACGAGAATTTCTCGTGCCACCAGTGCAGGCACCAGCCCCTGGAAAAAGTGCCCCAGCTTGTCATACGGATTACGACTCAACCCCAGCCATTCCTGCACCTCAAAACCAACGGGGACTTTCGCGTAGGTGTATTGTCCGCCGACCATCAGGATGATGGCGTGAAGGAAAATGAGCGTATAGAGCAGCGGCGTTAACGGATAACGTCTGGCGGTGGCAAGCAGTAGCTGCACGACAATAATCACCGGTGTCACTTCCATCAGCCAGGTGAGTTTGTCATGGGCCGAAATGC > NC_000913/4345012‑4345485 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |