| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 518,196 | G→A | F28F (TTC→TTT) | cnoX ← | chaperedoxin |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 518,196 | 0 | G | A | 90.9% | 21.7 / NA | 11 | F28F (TTC→TTT) | cnoX | chaperedoxin |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (7/3); minor base C (1/0); total (8/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 | |||||||||||
CGGCCCCTGGAAGCCATCTACCGGTTGCCCGTTCTGGAACAGATACACGGTCGGAATCGCACGCAGACCAAACTGCGCGGCAATCATCTGCTCCGCGTCGCAGTCCAGCTTCGCCAGAATAAATTGCCCGTTGTACTGCGCCGCGAGGCTTTCCAGAATTGGGGTTAACTGCAAACAGTGCTGGCTACGTTCAGACCAAAAATAGAACAGCACCGGAGTGGTCATCGACTGTTCAAGAACCTGTTGCAGGTTAGATTCGTTAATGTTGACAATATTTTCTACGGACATGGAGTCGCTCTCTGTTGTCGATATTTTCTTTGACATGGGGGCTTAAGCGCGCGCTTCAACTCACCCCTGCAATATTTTGTCCATCACGCGCCCCGGCAGCAGGCGCTTAAGCACCATTACCGCCCAGGTCACCAGCGTCACCGGAT > NC_000913/517992‑518425 | cGGCCCCTGGAAGCCATCTACCGGTTGCCCGTTCTGGAACAGATACACGGTCGGAATCGCACGCAGACCAAACTGCGCGGCAATCATCTGCTCCGCGTCGCAGTCCAGCTTCGCCAGAATAAATTGCCCGTTGTACTGCGCCGCGAGGCTTTCCAGAATTGGGGTTAACTGCAAACAGTGCTGGCTACGTTCAGACCAAAAATAAAACAGCACCGGAGTGGTCATCGACTGTTCAAGAACCTGTTGCAGGt < 1:134706/251‑1 (MQ=255) cTACCGGTTGCCCGTTCTGGAACAGCTACACGGTCGTCATCGCACGCAGACCAAACTGCGCGGCAATCATCTGATCCGAGTAGCAGTCCAGCTTCGACAGAATAAATTGCCCGTTGTACTGCGCCGCGCGGCTTTCCAGAATTGGGGGTAACTGCAAACAGTGCTGGCTCCGTTCAGACCAAAAATAAACCAGCACCGGAGTGGTCATCTACTGTTCAAGAACCTGTTGCAGGTTAGATTCGTTAATGTTg > 1:84429/1‑251 (MQ=255) angcaGACCAACCTGCGCGGCAATCATCTGCTCCGCGTCGCAGTCCAGCTTCGCCAGAATAAATTGCCCGTTGTACTGCGCCGCGAGGCTTTCCAGAATTGGGGTTAACTGCAAACAGTGCTGGCTACGTTCAGACCAAAAATAAAACAGCACCGGAGTGGTCATCGACTGTTCAAGAACCTGTTGCAGGTTAGATTCGTTAATGTTGACAATATTTTCTACGGACATGGAGTCGCTCTCTGTTGTCGat > 1:132156/1‑250 (MQ=255) ncAGTCCAGCTTCGCCAGAATAAATTGCCCGTTGTACTGCGCCGCGAGGCTTTCCAGCATTGGGGTTAACTGCAAAAAGTGCTGGCTACGTTCAGACCAAAAATAAACCAGCACCGGAGTGGTCATCGACTGTTCAAGAACCTGTTGCAGGTTAGATTCGTTAATGTTg > 1:41479/2‑169 (MQ=255) ntCCAGCTTCGCCAGAATAAATTGCCCGTTGTACTGCGCCGCGATGCTTTCCCGAATTGGGGTTAACTGCAAACAGTACTGGCTACGTTCAGACCAAAAATAAAACAGCACCGGCGTGGTCATCGACTGTTCCAGAACCTGTTGCAGGTTAGATTCGTTAATGTTGACAATATTTTCTACGGACATGGAGTCGCTCTCTGTTGTCGATATTTTCTTTGACATGTGGGCTTAAGCACGCGCTTCAACTCAcc > 1:101324/2‑251 (MQ=255) gCCCGTTGTACTGCGCCGCGAGGCTTTCCAGAATTGGGGTTAACTGCAAACAGTGCTGGCTCCGTTCAGACCAAAAATAAAACAGCACCGGAGTGGTCATCGCCTGTTCCAGAACTTGTTGCAGGTTAGATTCGTTAATGTTGACAATCTTTTCTACGGACATGGAGTCGCTCTCTGTTGTCGATATTTTCTTTGACATGGGGGCTTAAGCGCGCGCTTCAACTCACCCCTGCAATCTTTTGTCCCTCAcg > 1:21775/1‑251 (MQ=255) ccGTTGTACTGCGCCGCGAGGCTTTCCAGAATTGGGGTTAACTGCAAACAGTGCTGGTTACGTTGAGACCAACAATACAACAGCAACGGAGTGGTCATCGCCTGTTCAAGAACCTGTTGCAGGTTAGATTCGTTAATGTTGACAATATTTTCTACGGACATGGAGTCGCTCTCTGTTGTCGATATTTTCTTTGACATGGGGGCTTAAGCGCGCGCTTCAACTCACCCCTGCAATATTTTGTCCATCAcgcg > 1:81284/1‑251 (MQ=255) gcgcgAGGCTTTCTAGAATTGGGGTTAACTGCAAACAGTGCTGGCTACGTTCAGACCAAAAATAAAACAGCACCGGAGTGGTCATCGACTGTTCAAGAACCTGTTGCAGGTTAGATTCGTTAATGTTGACAATATTTTCTACGGACATGGAGTCGCTCTCTGTTGTCGATATTTTCTTTGACATGGGGGCTTAAGCGCGCGCTTCAACTCACCCCTGCAATATTTTGTCCATCACGCGCCCCGGCAGCAgg > 1:132633/2‑251 (MQ=255) gAGGCTTTCCAGAATTGGGGTTAACTGCAAACAGTGCTGGCTACGTTCAGACCAAAAATAAAACAGCACCGGAGTGGTCATCGACTGTGCAAGAACCTGTTGCAGGTTAGATTCGTTAATGTTGACAATATTTTCTACGGACATGGAGTCGCTCTCTGTTGTCGATATTTTCTTTGACATGGGGGGTTAAGCGCGCGCTTCAACTCCCCCCTGCAATATTTTGTCCATCACGCGCCCCGGCAGCAGgcgat < 1:156208/251‑3 (MQ=255) cTTTCCAGAATTGGGGTTAACTGCAAACAGTGCTGGCTACGTTCAGACCAAAAATAAAACAGCACCGGAGTGGTCATCGACTGTTCAAGAACCTGTTGCAGGTTAGATTCGTTAATGTTGACAATATTTTCTACGGACATGGAGTCGCTCTCTGTTGTCGATATTTTCTTTGACATGGGGGCTTAAgcgcg < 1:84071/191‑1 (MQ=255) ncTACGTTCAGACCAAAAATAAAACAGCACCGGAGTGGTCATCGACTGTTCAAGAACCTGTTGCAGGTTAGATTCGTTAATGTTGACAATATTTTCTACGGACATGGAGTCGCTCTCTGTTGTCGATATTTTCTTTGACATGGGGGCTTAAGCGCGCGCTTCAACTCACCCCTGCAATATTTTGTCCATCACGCGCCCCGGCAGCAGGCGCTTAAGCACCATTACCGCCCAGGTCACCAGCGTCACCGGAt > 1:100698/2‑251 (MQ=255) | CGGCCCCTGGAAGCCATCTACCGGTTGCCCGTTCTGGAACAGATACACGGTCGGAATCGCACGCAGACCAAACTGCGCGGCAATCATCTGCTCCGCGTCGCAGTCCAGCTTCGCCAGAATAAATTGCCCGTTGTACTGCGCCGCGAGGCTTTCCAGAATTGGGGTTAACTGCAAACAGTGCTGGCTACGTTCAGACCAAAAATAGAACAGCACCGGAGTGGTCATCGACTGTTCAAGAACCTGTTGCAGGTTAGATTCGTTAATGTTGACAATATTTTCTACGGACATGGAGTCGCTCTCTGTTGTCGATATTTTCTTTGACATGGGGGCTTAAGCGCGCGCTTCAACTCACCCCTGCAATATTTTGTCCATCACGCGCCCCGGCAGCAGGCGCTTAAGCACCATTACCGCCCAGGTCACCAGCGTCACCGGAT > NC_000913/517992‑518425 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |