| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 631,633 | G→A | W580* (TGG→TGA) | cstA → | pyruvate transporter CstA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 631,633 | 0 | G | A | 83.3% | 10.0 / NA | 6 | W580* (TGG→TGA) | cstA | pyruvate transporter CstA |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (3/2); minor base C (1/0); total (4/2) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTAACACTCTGTGGCCGCTGTTTGGTATTGCCAACCAGATGCTGGCAGGGATGGCGCTGATGCTCTGTGCCGTGGTGTTGTTCAAGATGAAACGTCAACGTTACGCCTGGGTGGCGCTGGTACCAACGGCCTGGCTGCTGATTTGTACCCTGACCGCAGGCTGGCAGAAAGCGTTTAGCCCGGATGCGAAAGTCGGCTTCCTGGCCATTGCTAATAAGTTCCAGGCAATGATCGACAGCGGCAATATTCCGTCGCAGTATACTGAGTCACAGCTGGCGCAACTG > NC_000913/631444‑631807 | tAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGGGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTAACACTCTGTGGCCGCTGTTTGGTATTGCCAACCAGATGCTGGCAGGGATGGCGCTGATGCTCTGTGCCGTGGTGTTGTTCAAGATGAAACGTCAACGTTACGCCTGAGTGgc < 1:61304/195‑1 (MQ=255) gTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTAACACTCTGTGGCCGCTGTTTGGTATTGCCAACCAGATGCTGGCAGGGATGGAGCTGATGCTCTGTGCCGTGGTGTTGTTCAAGATGAAACGTCAACGTTCCGCCTGAGTGGCGCTGGTACCAACGGCCTGGCTGCTGATTTGTACCCTGACCGCAGGCTGGCAGAAAGCGTTTAGCCCGGCTGCGAAAGTCGGCTTCCTgg > 1:65651/1‑251 (MQ=255) ggcggcATTAACACTCTGTGGCCGCTGTTTGGTATTGCCAACCAGATGCTGGCAGGGATGGCGCTGATGATCTGTGCCGTGGTGTTGTTCAAGATGAAACGTCAACGTTACGCCTGCGTGGCGCTGGTACCAACGGCCTGGCTGCTGATTTGTACCCTGACCGCAGGCTGGCAGAAAGCGTTTAGCCCGGATGCGAAAGTCGGCTTCCTGGCCATTGCTATTAAGTTCCAGGCAATGATCGACAGCGGCa > 1:95144/1‑250 (MQ=255) tgGCCGCTGTTTGGTATTGCCAACCAGATGCTGGCAGGGATGGCGCTGCTGCTCTGTGCCGTGGTGTTGATCAAGATGAAACGTCAACGTTACGCCTGAGTGGCGCCGGTACCACCGGCCTGGCTGCTGATTTGTACCCTGACCGCAGGATGGCAGACAGCGTTTAGCCCGGATGCGAAAGTAGGCTTCCTGGCCATTGCTCATAAGTTCCAGGCAATGATCGACAGCGGCAATATTCCGTCGCAGTATAc > 1:80919/1‑251 (MQ=255) gCCGCTGTTTGGTCTTGCCCACCAGCTGCTGGCAGGGATGGCGCTGATGCTCTGTGCCGTGGTGTTGTTCAAGATGAAACGTCAACGTTACGCCTGAGTGGCGCTGGTACCAACGGCCTGGCTGCTGATTTGTCCCCTGACCGCAGGCTGACAGAAAGCGTTTa > 1:138146/1‑164 (MQ=255) aCCAGATGCGGGCAGGGATGGCGCTGATGCTCTGTGCCGTGGTGTTGTTCAAGATGAAACGTCAACGTTACGCCTGAGTGGCGCTGGTACCAACGGCCTGGCAGCTGATTTGTATGCTGACCGCAGTCTGGCAGAAAGCGTGTAGTCCGGATGCGAAAGTCGGCTTCGTGGCCAGTGCTAATTAGTTCCGGTCAATGAGCGACAGCGGCAATATTCCGTCGCAGTATACTGAGTCACAGCTGGCGCAACTg < 1:170632/251‑1 (MQ=255) | TAACCTGCTGGCAACAGCGCTGTGCGTACTGGCGTGGGGCTACTTCCTCCATCAGGGCGTGGTCGATCCGCTGGGCGGCATTAACACTCTGTGGCCGCTGTTTGGTATTGCCAACCAGATGCTGGCAGGGATGGCGCTGATGCTCTGTGCCGTGGTGTTGTTCAAGATGAAACGTCAACGTTACGCCTGGGTGGCGCTGGTACCAACGGCCTGGCTGCTGATTTGTACCCTGACCGCAGGCTGGCAGAAAGCGTTTAGCCCGGATGCGAAAGTCGGCTTCCTGGCCATTGCTAATAAGTTCCAGGCAATGATCGACAGCGGCAATATTCCGTCGCAGTATACTGAGTCACAGCTGGCGCAACTG > NC_000913/631444‑631807 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |