| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,072,023 | G→A | A210V (GCT→GTT) | yihT ← | 6‑deoxy‑6‑sulfofructose‑1‑phosphate aldolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,072,023 | 0 | G | A | 85.7% | 12.0 / ‑5.8 | 7 | A210V (GCT→GTT) | yihT | 6‑deoxy‑6‑sulfofructose‑1‑phosphate aldolase |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (2/4); total (2/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATGCGCCCGCCGTCATTGCCACGCGTACGGCACGCGGGAACAGTTTTTCGTCGACACCGGAAGAGAGGATCACCCATGGCATATTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGCATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAACTCTTTCACCATATCCAGACGTTGCTGCGCATCTTCATC > NC_000913/4071832‑4072258 | cgcAAACGTCACGCAGCATCAGCTCGTTGTCGGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATGCGCCCGCCGTCATGGCCACGCGTACGGCACGCGGGAACAGTTTTTCGTCGACACCGGAAGAGAGGATCACCCATGGCATATTGATATGGTCATTCAGACGTTGTGAAACACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAgg < 1:5026/251‑1 (MQ=255) aaCGTCACGCGGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGAGGCGCCCGCCGTCATTGCCACGCGTACGGCACGCGGGAACAGTTTTTCGTCGACACCGGAAGAGAGGATCACCCATGGCATATTGAGATGGGCATGCAGACGGTGTGAAACACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAg < 1:160221/251‑1 (MQ=255) aCCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATGCGCCCGCCGTCATTGCCACGCGTACGGCACGCGGGAACAGTTTTTCGTCGACACCGGAAGAGAGGATCACCCATGGCATATTGATATGGTCATTCAGACGTTGTGAAACACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTgn < 1:40110/242‑2 (MQ=255) gNCCAGACTGCACGGCCTACCAGGAATCCCGATGCGCCCGCCGTCATTGCCACGCGTACGGCACGCGGGAACAGTTTTTCGTCGACACCGGAAGAGAGGATCACCCATGGCATATTGATATGGTCATTCAGACGTTGTGAAACACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTACAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGCATCGATGATCGCTTGTTc > 1:132082/1‑251 (MQ=255) cATTGCCACGCGTACGGCACGCGGGAACGGTTTTTCGTCGACACCGGACGAGAGGATCACCCATGGCATATTGATATGGTCATTCAGACGTTGTGAAACACAGAGAAGCTTTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAgcgc > 1:54468/1‑164 (MQ=255) cATTGCCACGCGTACGGCACGCGGGAACAGTTTTTCGTCGACACCGGAAGAGAGGATCACCCATGGCATATTGATATGGTCATTCAGATGTTGTGAAACACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGCATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTggn < 1:29557/250‑2 (MQ=255) tCAGACGTTTTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGCAACGATGATCGCGTGTTCTCGATCGAATTTAGCGCCACGACGCGGTGGGCGGCCGACTGGCTCAATGATGGTTACCAGTCCGTGTGAGTGGCACAGTTCGTTGAACTCTTTCACCATAGCCAGACGTTGCTGCGCATCTtcatc < 1:110406/250‑1 (MQ=255) | CGCAAACGTCACGCAGCATCAGCTCGTTGTCTGGTAAACCGACGACCGATGCCCAGACTGCACGGCCTGCCAGGAATCCCGATGCGCCCGCCGTCATTGCCACGCGTACGGCACGCGGGAACAGTTTTTCGTCGACACCGGAAGAGAGGATCACCCATGGCATATTGATATGGTCATTCAGACGTTGTGAAGCACAGAGAAGCTCTTGTTGCGGACCTTTGCCATAAAGCGGCATTTCAACTTTGTAGAGGTCAGCGCCACTGTCGCCCAGCTCTTTGGCGGCATCGATGATCGCTTGTTCGCGATCGAATTTATCGCCACGACGCGGTGGGCGGACGACTGGCTCAATGATGCTTACCAGACCGTGTGAGTGGCACAGTTCGTTGAACTCTTTCACCATATCCAGACGTTGCTGCGCATCTTCATC > NC_000913/4071832‑4072258 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |