| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,452,971 | G→A | S224S (AGC→AGT) | paaZ ← | fused 3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase and oxepin‑CoA hydrolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,452,971 | 0 | G | A | 83.3% | 24.7 / ‑5.7 | 12 | S224S (AGC→AGT) | paaZ | fused 3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase and oxepin‑CoA hydrolase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (4/6); minor base C (1/1); total (5/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCCGGATTGCCGTACATTTTTGCCCGGCTTTTGTGGTCATCTCACGCACAACTTCACGAATAAACAGCGCAAACTCCGGTTGATCCGGGGTGACATCTTCGCCCAGTACGCAGCAGTTCAGGGAATCAGCTTCCATAGTGAAGGGGATAGATTTGGCGACGATATTTGGCTGAACTCGCAGCATCTGTCCGGTCGCCGCTGACCCCGTGAAAGTCACCACATCCTGGCTGTCCAGATGATCCAACAAGTCGCCAGCACTACCGCAGATCAGACTAATTGCGCCTTCGGGAACAAGACCACTATCGACAATTGATTTCACCATCGCCTGAGTCAGTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCAGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGG > NC_000913/1452745‑1453209 | gccgGATTGCCGTACATTTTTGCCCGGCTTTTGTGGTCATCTCACGCACAACTGCACGAATAAACAGCGCAAACTCCGGTTGATCCGGGGTGACATCTTCGCCCAGTACGCAGCAGTTCAGGGAAGCAGCTTCCATAGTGAAGGGGATAGATTTGGCGACGATATTTGGCTGAACTCGCAGCATCTGTCCGGTCGCCGCTGACCCCGTGAAAGTCACCACATCCTGACTGTCCAGATGATCCAACAAGTCg < 1:75337/251‑1 (MQ=255) caACTTCACGAATAAACAGCGCAAACTCCGGTTGATCCGGGGTGACATCTTCGCCCAGCACGCAGCAGCTCAGGGACTCAGCTTCCATAGTGAAGGGGATAGATTTGGCGACGATATTTGGCTGAACTCGCAGCATCTGTCCGGTCGCCGCTGACCCCGTGAAAGTCACCACATCCTGCCTGACCAGATGATCCAACACGTCGCCAGCCCTACCGCAGATCAGACTAATTGCGCCTTCGGGAACAAGAcc > 1:117520/1‑250 (MQ=255) cGAATAAACAGCGCAAACTCCGGTTGATCCGGGGTGACATCTTCGCCCAGTACGCAGCAGTTCAGGGAATCAGCTTCCATAGTGAAGGGGATAGATTTGGCGACGATATTTGGCTGAACTCGCAGCATCTGTCCGGTCGCCGCTGACCCCGTGAAAGTCACCACATCCTGACTGTCCAGATGATCCAACAAGTCGCCAGCACTACCGCAGATCAGACTAATTGCGCCTTCGGGAACAAGACCACTATCGAc > 1:137257/1‑251 (MQ=255) cAAACTCCGGTTGATCCGGGGTGACATCTTCGCCCAGTACGCAGCAGTTCAGGGAATCAGCTTCCATAGTGAAGGGGATAGATTTGGCGACGATATTTGGCTGAACTCGCAGCATCTGTCCGGTCGCCGCTGACCCCGTGAAAGTCACCACATCCTGACTGTCCAGATGATCCAACAAGTCGCCAGCACTACCGCAGATCAGACTAATTGCGCCTTCGGGAACAAGACCACTATCGACAATTGATTTCAc > 1:35250/1‑250 (MQ=255) ccGGGGTGACTGCTTCGCCCAGTACGCAGCAGTTCAGGGAATCATCTTCCATAGTGAAGTGGATAGATGTGGCGACGATATTTGGCTGAACTCGCAGCATCTGTCCGGTCGCCGCTTACCCCGTGAAAGTCCCCACATCCTGACTGTCCAGATTAGCCAACAAGTCGCCAGCTCTACCGCAGAGCAGACTAATTGCGCCTTCGGGAACAATTCCACTATCGACAATTGATTTCACCATCGCCTGAGTCAGt < 1:121550/251‑1 (MQ=255) cgacgaTATTTGGCTGAACTCGCAGCATCTGTCCGGTCGCCGCTGACCCCGTGAAAGTCACCACATCCTGACTGTCCAGATGATCCAACAAGTCGCCAGCACTACCGCAGATCAGACTAATTGCGCCTTCGGGAACAAGACCACTATCGACAATTGATTTCACCATCGCCTGAGTCAGTTGGGCCGTCGCGGTAGCTGGTTTGATGAtgg < 1:22796/210‑1 (MQ=255) tGGCTGAACTCGCAGCATCTGTCCGGTCGCCGCTGACCCCGTGAAAGTCACCACATCCTGACTGTCCAGATGATCCAACAAGTCGCCAGCACTACCGCAGATCAGACTAATTGCGCCTTCGGGAACAAGACCACTATCGACAATTGATTTCACCATCGCCTGAGTCAGTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCTCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCcan < 1:31131/250‑2 (MQ=255) angcgnanNTNNCAGNATCTGTCCGGTCGCCGCTGACNNCGTGAAAGTNACCACATCCTGACTGTCCAGATGATCCAACAAGTCGCCAGCACTACCGCAGATNAGACTAATTNNGCNGCCGGNANNNANNNCANTATCGACAATTGATTTCAC‑NTCNNCTGACTNAGTTGGGCCGTCGCGGTAGCTgggtt < 2:35250/185‑4 (MQ=255) gTCCTGTCGCCGCTGACCCCGTGAAAGTCACCACATCCTGACGGGCCAGATGATCCAACAAGCCGCCAGCACTACCGCAGATCAGACTAATTGCGCCTTCGGGAACAAGACCACGAGCGACAATTGATTTCACCATCGCCTGAGTCAGTTGGGCGGGCGCGGTAGCTGGGTTGATGAGGGCTGGCATTGCGCCCGGCCACGTTGGTGCCATCTTGTCCAGCATTCCCCAGCAGGGGAAGTTAAAGGCg < 1:64318/248‑1 (MQ=255) cccGTGAAAGTCACCACATCCTGACTGTCCAGATGATCCAACAAGTCGCCAGCACTACCGCAGATCAGACTAATTGCGCCTTCGGGAACAAGACCACTATCGACAATTGATTTCACCATCGCCTGAGTCAGTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACATTGGTGCCAGCTTTTCCAGCATTCCCCAGCAGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGcc > 1:97038/1‑251 (MQ=255) caccacATCCTGACTGTCCAGATGATCCAACAAGTCGCCAGCACTACCGCAGATCAGACTAATTGCGCCTTCGGGAACAAGACCACTATCGACAATTGATTTCACCATCGCCTGAGTCCGTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCAGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAgg > 1:21627/1‑251 (MQ=255) accacATCCTGCCTGTCCAGATGATCCAACAAGTCGCCAGCACTACCGCAGATCAGACTAATTGCGCCTACGGGAACAAGACCACTATCTACAATTGATTTCACCATCGCCTGAGTCAGTTGGGCCGTCGCGGTAGCTGGTTTGATGTtggct < 1:128412/153‑1 (MQ=255) | GCCGGATTGCCGTACATTTTTGCCCGGCTTTTGTGGTCATCTCACGCACAACTTCACGAATAAACAGCGCAAACTCCGGTTGATCCGGGGTGACATCTTCGCCCAGTACGCAGCAGTTCAGGGAATCAGCTTCCATAGTGAAGGGGATAGATTTGGCGACGATATTTGGCTGAACTCGCAGCATCTGTCCGGTCGCCGCTGACCCCGTGAAAGTCACCACATCCTGGCTGTCCAGATGATCCAACAAGTCGCCAGCACTACCGCAGATCAGACTAATTGCGCCTTCGGGAACAAGACCACTATCGACAATTGATTTCACCATCGCCTGAGTCAGTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCAGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGG > NC_000913/1452745‑1453209 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |