| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,486,828 | C→T | P13L (CCC→CTC) | yhfK → | putative transporter YhfK |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,486,828 | 0 | C | T | 91.7% | 23.4 / ‑6.0 | 12 | P13L (CCC→CTC) | yhfK | putative transporter YhfK |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (6/5); total (7/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.41e-01 | |||||||||||
CGGTATGCAAATCAAAATTACCCGTCAGGAAATTGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCATTCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGATGTGGCGCAGACTGATTTATCACCCCGATATCAACTATGCACTTCGACAAACGCTGGTGCTATGTTTGCCCGTGGCCGTTGGGTTAATGCTTGGCGAATTACGATTCGGTCTGCTCTTCTCCCTCGTTCCTGCCTGTTGCAATATTGCGGGCCTTGATACGCCTCATAAACGTTTTTTCAAACGCTTAATCATTGGTGCGTCGCTGTTTGCCACCTGTAGCTTGCTGACACAGCTACT > NC_000913/3486605‑3487041 | cGGTATGCACATCAACATTACCCGTCAGGAAATTGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCATTCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTACAACCATCGTCGTTTACGGCACTCGTTAATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGATGTGGCGCAGACTGATTTATCACCTCGATATTAACTATGCACTTCGACaaa > 1:136899/1‑250 (MQ=255) tGTCGGCTGTTCTCGTGAAACCGGGGGACGCATTCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAATCCCGGCTGAGTGGCGCGTGTCCTGGTAGCGCGCCATATTGTTTCCCCCGATGTGGCGCAGACTGATTTATCTCCTCGATATTAACTATGCACTTCGACAAACGTTGGTGCTATGTTTGCCCGTGGCCGTTTGGTTAATGCTTg < 1:116359/250‑1 (MQ=255) gTCGGCTGTTCTCGTGAAACCGTGGGACGCATTCTGAAGATGCTGGAAGATCAGAACCTTATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCCTTTTGTTTCCCCCGAGGTGGCGCAGACTGATTTATCACCTCGATATTAAATATGCACTTCGAAAAACGCTGGTGCTATGTTTGCCCGTGGCCGTTGGGTTAAAGCTTGGc > 1:22798/1‑251 (MQ=255) gTCGGCTGTTCTCGTGAAACCGTGGGACGCATTCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGATGTGGCGCAGACTGATTTATCACCTCGATATTAACTATGCACTTCGACAAACGCTGGTGCTATGTTTGCCCg > 1:133742/1‑228 (MQ=255) gTCGGCTGTTCTCGTGAAACCGTGGGACGCATTCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGATGTGGCGCAGACTGATTTATCACCTCGATATTAACTATGCACTTCGACAAACGCTGGTGCTATGTTTGCCCGTGGCCGTTGGGTTAATGCTTggn < 1:135414/251‑2 (MQ=255) cGGCTGTTCTCGTGAAACCGTGGGACNCATTCTNNAGNTGCTGGAAGATCAGAACCANATNNNCNNNCNAGGTANAANNCTCGTCGTTNACGGCACTCGTTACTCCCGTCGGAGTGGCGCGTTACCTGGTCGCGCGTCCTTTNGTTTCCACCNNTGTGGCGCAGACTGATTTATCNCCTNNANNTNAAcnttn > 2:34979/1‑189 (MQ=255) cGGCTGTTCTCGTGAAACCGTGGGACGCATTCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGTCATTTTGTTTCCCCCGATGTGGCGCAGACTGATTTCTCCCCTCGATATTAACTATGTAATTCGACAAACGCTGGTGCTATGTTTGCCCGTGGCCTTTTGGTTAATGc < 1:34979/244‑1 (MQ=255) tctcGTGAAACCGTGGGACGCATTCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGATTTGGCGCAGACTGATTTATCACCTCGATATTAACTATGCACTTCGACAAACGCTGGTGCTATGTTTGCCCGTGGCCGTTGGGTTaan < 1:48941/235‑2 (MQ=255) gAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGATGTGGCGCAGACTGATTTGTCACCTCGATATTAACTATGCACTTCGACAAACGCTGGTGCTATGTTTGCCCTTGGCCGTTGGGTTAATGCTTGGCGAATTACGATTCGGTCTGCTCTTCTCCCTCGTTc < 1:162708/250‑1 (MQ=255) tGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAATACCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGATGTGGCGCAGACTGATTTATCACCTCGATATTAACTATGCACTTCGACAAACGCTGGTGCTATGTTTGCCCGTGGCCGTTGGGTTAATGCTTGGCGAATTACGATTCGGTCTGCTCTTCTCCCTCGTTCCTGCCTGtt > 1:70840/1‑251 (MQ=255) gcgTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGATGTGGCGCAGACTGATTTATCACCTCGATATTCACTATGAACTTCGACAAACGCTGGTGCTATGTTTGCCCGTGGCCGTTGGGTTAATGCTTGGCGAATTACGATTCGGTCTGCTCTTCTCCCTCGTTCCTGCCTGTTGCAATATTGCGGGCCTTGATACGCCTCATAAACGTTTTTTCAAACGCTTAATCATTGGTGCGTCGCTGTTTGCCAcc > 1:27822/1‑251 (MQ=255) tgtttctaccgctgtcgcgcCGACTGATTTAATACCCCCCTATTAACTATGCACTTCGACAAACGCAGATGCTACGTTTGCCAGAGGCAGTTGGGTTAAAGCCTGGCGAATTACGATTCGGTCTGCCATTTTCCCCCGATCCTGCCAGTTGCAATATTGCGGGCCTTGATACGCCTCATAAACGGTTTTTCAAACGCTTATTCCTTGGGGCGTCGCTGTTTGCCACCTGTAGCTTTCTGACACAGctact > 1:142027/17‑250 (MQ=255) | CGGTATGCAAATCAAAATTACCCGTCAGGAAATTGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCATTCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTTGTTTCCCCCGATGTGGCGCAGACTGATTTATCACCCCGATATCAACTATGCACTTCGACAAACGCTGGTGCTATGTTTGCCCGTGGCCGTTGGGTTAATGCTTGGCGAATTACGATTCGGTCTGCTCTTCTCCCTCGTTCCTGCCTGTTGCAATATTGCGGGCCTTGATACGCCTCATAAACGTTTTTTCAAACGCTTAATCATTGGTGCGTCGCTGTTTGCCACCTGTAGCTTGCTGACACAGCTACT > NC_000913/3486605‑3487041 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |