| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,259,431 | C→T | intergenic (‑135/+288) | psuK ← / ← fruA | putative pseudouridine kinase/fructose‑specific PTS multiphosphoryl transfer protein FruA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,259,431 | 0 | C | T | 91.7% | 24.8 / ‑5.7 | 12 | intergenic (‑135/+288) | psuK/fruA | putative pseudouridine kinase/fructose‑specific PTS multiphosphoryl transfer protein FruA |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (8/3); minor base A (1/0); total (9/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 | |||||||||||
ATCCGCATAATTTAATGATTCATGTGAATATCCGGCGACATCAATATTCGCCGAACCTATAATTACGACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGTGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACGGGATGCACAGAACAGAACAATAAAAAAGGGCAGAAAATAATCTGCCCTTGAGGAAATAACCTGAGTGTTTGATGAACGTTTGAAGTTTCTACTGAAAGATAAAACCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTT > NC_000913/2259210‑2259663 | aTCCGCATAATTTAAGGATTCATGTGAATATCCGGCGACATCAATATTCGCTGAACCTATAATTACGACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGAAAAGACGGTTTAAACATGTGTTCATATTTAAACATGTGCGCATAGTATGCATGTTTTACGTAAAGTAAATTACCGTCAGAGAGGCAAAATGGGCATATTTGAGCa < 1:112528/251‑1 (MQ=255) cGACATCAATATTCGCCGAACCTATAATTACGACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATGGATACTGCAAAGTCGGTTTAAACATGTGTTCATATTTAAACATGTGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGTCATAGAGGCAAAATTGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACaa < 1:166217/251‑1 (MQ=255) gCCGAACCTATAATTACGTCATAATCCTTTTCGCGCATAGCACGTCCTCTGGAAAAAAATTACCCACCCTGTCAATCCACAGGATTATAGATCCTGCTACGACGGTTTAAACATGTGTTCCTATTTAAACATGTGCTCATAGTATGCATGTTTTACGCAAAGTAAATTACCGTCAGAGAGGCAAAATGGGCAGATTTAAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTtg > 1:89514/1‑251 (MQ=255) cGAACCTATAATTACGACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGTGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGTCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTtgtg > 1:70204/1‑251 (MQ=255) nccTATAATTATGACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGTGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGTCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTtg > 1:48391/2‑246 (MQ=255) ccTATAATTACGACATAATCCTTTTCGCGCATAGAACGTACTCTGGTAAAAAATTACCGACACTGTGCATCCACAAGAATATAGATACTGCAAAGACGGATTAAACATGTGTTCATATTTAAACATGTGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGTCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACgg > 1:147592/1‑251 (MQ=255) aaTCCTTTTCGCGCATAGCACTTCCTCTGGTAAAAAATTACCAACCCTGTCAACCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATAATTAACCATGTGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGTCAGAGAGGCAAAATGGGCAGATTTGAGCAGTCTCACAAAATGCTATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACGGGATGCacagaacaga < 1:165605/250‑1 (MQ=255) caAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGTGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGTCCGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACGGGATGCACAGAACAGAACAATAAAAAAGGGCAGAAAATAATCTGCCCTTGAGGAAATAACCTGAGTGTTtgatg > 1:109698/1‑251 (MQ=255) caAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGTGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGTCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACGGGATGCACAGAACAGAACAATAAAAAAGGGCAGAAAATAATCTGCCCTTGAGGAAATAACCTGAGTGTTtgatg > 1:11578/1‑251 (MQ=255) ntGCAACGACGGTTTATACATGTGTTCATATTTAAACATGTGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGTCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGACTTACAAAAGCGAGGAATTTGTGACGGGATGCACagaacagaac > 1:135193/2‑181 (MQ=255) ttttAAACATGTGTTCATATTTAAACATGTGCTCATAGTATGCATGTTTCCCGAAACGAAAATTACAGACAGAGCGGCAAAAAGGGAAGATTTGCGAAGGCTCAAAAACTGCGATTCCATGACTGCCTCACAAAAGCGAGGAATTTGTGACGGGATCCCCAGAACAGAACAATCAAAAAGGGCAGAAAATAATCTGCCCTTGAGGAAATAACCTGAGTGTTTGATGAACGTTTGCAGTTTCTACTGaa > 1:80315/2‑248 (MQ=255) aCGTAAAGTAAATTACCGTCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAACTGCGATTACATGCCTGAATTGCATAAGCGCGGAGTTTGTGACGTGATGCACAGAACAGACCAATAAATAAGGGCAGAAAATAATCTGCCCTTGAGGAAATAACCTGAGTGTTTGATGAACGTTTGAAGTTTCTACTGAACGATAAAACCATTTAAATTCATAAAATTACATTCACAAACCGGTCCTTCTCtt > 1:116629/1‑251 (MQ=255) | ATCCGCATAATTTAATGATTCATGTGAATATCCGGCGACATCAATATTCGCCGAACCTATAATTACGACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGTGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACGGGATGCACAGAACAGAACAATAAAAAAGGGCAGAAAATAATCTGCCCTTGAGGAAATAACCTGAGTGTTTGATGAACGTTTGAAGTTTCTACTGAAAGATAAAACCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTT > NC_000913/2259210‑2259663 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |