New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	279163 =	NA (NA)	11 (1.340)	8/334	0.1	91.7%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	2666074 =	1 (0.120)					coding (640/1281 nt)	csiE	stationary phase‑inducible protein CsiE

GCTGCAAAAACGCTTTGAATCGCGCGATATTCATTTCCTGTGTCTGTATCTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGTTTTTATGATGAACAGGGGTTATGTGATCAGCTTTATACCCACCTCGCCCAGGCGTTAAATCGCAGTTTGTTTGCCATCGGTATTGATAATACCCTGCCGGAAGAGTTCGC  >  NC_000913/2665851‑2666300                                                                                                                                                                                                                                |                                                                                                                                                                                                                                   gCTGCAAAAACGCTTTGAATCGCGCGATATTCATTTCCTGTGTCTGTATCTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTccggtgatgctgccaacttan                                                                                                                                                                                                         <  1:30847/251‑20 (MQ=255)             gccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATg                                                                                                                                                                                             <  1:38810‑M2/40‑1 (MQ=255)                       gaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggaacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCg                                                                                                                                                                                   >  1:63542‑M2/202‑251 (MQ=255)                                                acgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaagcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATc                                                                                                                                                          <  1:87559‑M2/75‑1 (MQ=255)                                                                      gcagcgcattgagccgcataacctgaatctgaggcagcacctggcacggctgggacggtagtcgctgtcgttctcaaaatcggtggagcagcctgacaaagtcatcgggccttatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGCTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGCCAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTc                                                                                                                                    >  1:38562‑M2/155‑251 (MQ=255)                                                                                                                  nacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGTTTTTATGATGAACAGGGGTTAtgt                                                                                        >  1:42371‑M2/111‑251 (MQ=255)                                                                                                                                                        gtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATNGCGNNNNnctnn                                                                                                                                                           >  2:103920‑M2/73‑144 (MQ=255)                                                                                                                                                                  atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATTCGCATcan                                                                                                                                                                                     <  1:43343‑M2/48‑2 (MQ=255)                                                                                                                                                                                gggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAAcc                                                                                                                                          <  1:80146‑M2/91‑1 (MQ=255)                                                                                                                                                                                           gaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATGACGTCAGGCTATCAAACGTCTGGTAAACCATTTGCGTGAGCTGGGAAATGTTCGTGTTTATGATGAACAGGGGTTATGTGATCAGCTTTATACCCACCTCGCCCAGGCGTTAAATCGCAGTTTGTTTGCCATCGGTATTGATAATAccc                  <  1:173751‑M2/211‑1 (MQ=255)                                                                                                                                                                                                  aaacactancnnnannttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCANTGAGGGATGCGCATCNGCNGGACNGACNATTGCGTCAGTCt                                                                                                                                                             >  2:119181‑M2/31‑102 (MQ=255)                                                                                                                                                                                                         atcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGTTTTTATGATGAACAGGGGTTATGTGATCAGCTTTATACCCACCTCGCCCAGGCGTTAAATCGCAGTTTGTTTGCCATCGGTATTGATAATACCCTGCCGGAAGAGTTcgn  <  1:103920‑M2/227‑2 (MQ=255)                                                                                                                                                                                                                                |                                                                                                                                                                                                                                   GCTGCAAAAACGCTTTGAATCGCGCGATATTCATTTCCTGTGTCTGTATCTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGTTTTTATGATGAACAGGGGTTATGTGATCAGCTTTATACCCACCTCGCCCAGGCGTTAAATCGCAGTTTGTTTGCCATCGGTATTGATAATACCCTGCCGGAAGAGTTCGC  >  NC_000913/2665851‑2666300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.