| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 530,193 | G→A | A345V (GCG→GTG) | selU ← | tRNA 2‑selenouridine synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 530,193 | 0 | G | A | 87.5% | 12.0 / ‑5.9 | 8 | A345V (GCG→GTG) | selU | tRNA 2‑selenouridine synthase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (3/4); minor base T (0/1); total (3/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGTTACCTCTTGTTTTGGATAAGGATTCGACACTCATATCAAAACCGGTAACTCTCAACCTTTCAAGGCCATGTGTCAGATCAAGTCGCGACTAATACAAATACGTCCCTCATTACCGCGCCTTAACCCATTCCGCCACTTCCGCCCACTCACCGCGAAAGACAACTTTTTCCGCTTTTTTCTCAAGCTGATAGCGATACATCGGGTCGTAATATTCTTCAAGTAACGGCACCAGCCAGGCCAGATGACCGTCGGTGCTGCCGGTGGTGAGTTGCGTTGTCAGTGCTGCATCCAGCCTTGCAGCCAGTTCGTTATAGCGCTGTAGCCCCAGCCGACGCTTAATCGCCGAAAGTCCGTGATGCAGG > NC_000913/530020‑530384 | agTTACCTTTTGTTTTGGAGAAGGATTCGACACTCATATCAAAACCGGTAACTCTCAACCTTTCAAGGCCATGTGTCAGATCAAGTCGCGACTAATACAAATACGTCCCCCATTACCGCGCCTTAACCCATTCCGCCACTTCCGCCCACTCACCGCGAAAGACAACTTTTTCCACTTTTTTCTCAAGCTGATAGCGATACATCGGGTCGTAATATTCTTCAAGTAACGGCACCAGCCAGGCCAGATGACCg < 1:61483/251‑1 (MQ=255) cacTCATATCAAAACCGATAACTCTCAACCTTTCAATGCCGTGTGTCAGATCACGTCGCGCCTAATACACATACGACACTCATTCCCGCGCCTTAACCCATTCCGCCACTTCCGCCCACTCACCACGACAGAAAACTTTTTCCACTTTTTTCTCACGCTGATAGCGATACATCGGGTCGTCATATTCTTCAAGTAACGGCACCAGCCACGCCCGATGACCGTCGGTGCTGCCGGTGGTGAGTTGCGtt > 1:109484/1‑248 (MQ=255) ctcAACCTTTCAAGGCCATGTGTCAGATCAAGTCGCGACTAATACAAATACGTCCCTCATTACCGCGCCTTAACCCATTCCGCCACTTCCGCCCACTCACCGCGAAAGACAACTTTTTCCACTTTTTTCTCAAGCTGATAGCGCTACATCGGGTCGTAATATTCTTCAAg > 1:166014/1‑170 (MQ=255) ctcAACCTTTCAAGGCCATGTGTCAGATCAAGTCGCGACTAATACAAATACGTCCCTCATTACAGCGCCTTAAACCATTCCGCCACTTCCGCCCACTCACCGCGCAAGACAACTTTTTCAACTTTTTTCTCAAGCTGATAGCGCTACACCGGGTCGTAATATTCTTCAAg > 1:166008/1‑170 (MQ=255) gtCAGATCAAGTCGCGACTAATAAAAATACGTCCCTCATTACCGCGCCTTAACCCATGCCGCCACTTCCGCCCACTCACCGCGAAAGACAACTTTTTCCACTTTTTTCTCAAGCTGATAGCGATACATCGGGTCGTAATATTCTTCAAGTAACGGCACCAGCCAGGCCAGATGACCGTCGGTGCTGCCGGTGGTGAGTTGCGTTGTCAGTGCTGCATCCACCCTTTCAGCCAGTTCGTTATAGCTCTGtn < 1:47830/250‑2 (MQ=255) cccGCGCCTTAACCCATTCCGCCACTTCCGCCCACTCACCGCGAAAGACAACTTTTTCCACTTTTTTCTCAAGCTGATAGCGATACATCGGGTCGTAATATTCTTCAAGTAACGGCACCAGCCAGGCCAGATGACCGTCGGTGTTGCCGGTGGTGAGGTGCGTTGTCAGTTCTGCATCCAGCCTTGCAGCCAGTTCGTGATAGCGCTGTAGCCCCAGCCGACGCTTAATCGCCGAAAGTCCGTGATGCAgg < 1:110874/250‑1 (MQ=255) gcCTTAACCCATTCCGCCACTTCCGCCCACGCGCCGCGAAAGACAACTTTTTCCTCTTTTTTCTAAGGCTGATAGCGAGACATCGGGTCGTAATATTCTTCAAGTAACGGCAccan < 1:20415/116‑2 (MQ=255) ccTTAACCCATTCCGCCACTTCCGCCCACTCACCGCGAAAGACAACTTTTTCCACTTTTGTCTCAAGCTGATAGCGATACATCGGGTCGTAATATTCTTCAAGTAACGGCACCAGCCAGGCCAGATGACCGTCGGTGCTGCCGGTGGTGAGTTGCGTTGTCAGTGCTGCATCCAGCCTTGCAGCCAGTTCGTTATAGCGCTGTAGCCCCAGCCGACGCTTAATCGCCGAAAGNc < 1:131901/234‑1 (MQ=255) | AGTTACCTCTTGTTTTGGATAAGGATTCGACACTCATATCAAAACCGGTAACTCTCAACCTTTCAAGGCCATGTGTCAGATCAAGTCGCGACTAATACAAATACGTCCCTCATTACCGCGCCTTAACCCATTCCGCCACTTCCGCCCACTCACCGCGAAAGACAACTTTTTCCGCTTTTTTCTCAAGCTGATAGCGATACATCGGGTCGTAATATTCTTCAAGTAACGGCACCAGCCAGGCCAGATGACCGTCGGTGCTGCCGGTGGTGAGTTGCGTTGTCAGTGCTGCATCCAGCCTTGCAGCCAGTTCGTTATAGCGCTGTAGCCCCAGCCGACGCTTAATCGCCGAAAGTCCGTGATGCAGG > NC_000913/530020‑530384 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |