| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 378,365 | C→T | E2K (GAA→AAA) | frmB ← | S‑formylglutathione hydrolase FrmB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 378,365 | 0 | C | T | 90.9% | 21.8 / ‑5.8 | 11 | E2K (GAA→AAA) | frmB | S‑formylglutathione hydrolase FrmB |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (4/6); minor base A (1/0); total (5/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.55e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 | |||||||||||
CCGCGTAACGCTGCATCCCCGATTTAGTAATGAAATTCTGCTCGTTGCAGGTCAGGCCTGAAAGCCAGTACAGCACCGGCAATTTTTCATTCGCGGCTTTTGGTGGGAGATAGACGCCGACATTCATTTCACATTTCAGTGATTGGGAATAATGCCGATACATATTTTGCCAGCCGCCAAAGCTGACATGTTTTTCAATGAGTTCCATCAGTCATTATCTCAGGGTTAATCCCCCGGACGGCTGCCCGGGGAGAGTATTAAGAACCCCCGCCTGAAGTGGACGGGGTAAACCTGCGGGAAATCAGTAACGAATTACGGTTCGAATGGATTTGCCTTCATGCATCAGGTCGAAGGCGTCATTAATTTCATCCAGGCTCATGGTATGCGTGACAAACGGTTCCAGATCGATATCACCTTTCATCGCATCTTCAACCATGCCCGG > NC_000913/378161‑378602 | ccGCGTAACGCTGCATCCCCGATGTAGTAATGAAATTCTGCTCGTTGCAGGTCAGGCCTGAAAGCCAGTACAGCACCGGCAATTTTTCATTCGCGGCTTTTGGTGGGAGATAGACGCCGACATTCATTTCACATTTCAGTGATTGGGAATAATGCCGATACATATTTTGCCAGCCGCCAAAGCTGACATGTTTTTCAATGAGTTTCATCAGTCATTATCTCAGGGTTAATCCCCCGGACGGCTGCCCgggg < 1:22612/251‑1 (MQ=255) aCGCTGCATCCCCGATTTAGTAATGAAATTCTGCTCGTTGCAGGTCAGGCCTGAAAGCCAGTACAGCACCGGCAATTTTTCATTCGCGGCTTTTGGTGGGAGATAGACGCCGACATTCATTTCACATTTCAGTGATTGGGAATAATGCCGATACATATTTTGCCAGCCGCCAAAGCTGACATGTTTTTCAATGAGTTTCATCAGTCATTATCTCAGGGTTAATCCCCCGGACGGCTGCCCGGGGAGAGTAt > 1:35163/1‑251 (MQ=255) ccGGCAATTTTTCATTCGCGGCTTTTGGTGGGAGATAGACGCCGACATTCATTTCACATTTCAGTGAGTGGGAATAATGCCGATACATAGTTTGCCAGCCGTCAAAGCTGACATGTTTTTCAAGGAGTTTCATCAGTCATTATCTCAGGGTGAATCCCCCGGACGGCTGCCCGGGGAGAGTATTAAGAACCCCCGCCGGAAGTGGACGGGGTAAACCTGCGGGAAATCAGTAACGAATTACGGTTCGAATg < 1:90669/251‑1 (MQ=255) aGTGATTGGGAATAATGCCGATACATATTTTGCCAGCCGCCAAAGCTGACATGTATTTCAATGAGTTTCATCAGTCATTATCTCAGGGTTAATCCCCCGGACGGCTGCCCGGGGAGCGTATTAAGAACCACCGCCTGAAGTGGACGGGGTAAACCTCCGGGAAATCAGTAACGAATTACGGTTCGAATGGATTTGCCTTCATGCATCAGGTCGAAGGCGTCATTAATTTCATCTAGGCTCATGGTATGCGt > 1:77587/1‑251 (MQ=255) gATTGGGAATAATGCCGATACATATTTTGCCAGCCGCCAAAGCTGACATGTTTTTCAATGAGTTTCATCAGTCATTATCTCAGGGTTAATCCCCCGGACGGCAGCCCGGGGAGAGGATTAAGAACCCCCGCCTGAAGTGTACGGGGTAAACCTGCTGGAAATCAGTAACGAATTACGTGTCGAATGGATTTGCCGTCAGGCATCAGGTCGAAGGCGTCATTAATTTCATCCAGGCTCATGGTATGCGTGAc < 1:169629/251‑1 (MQ=255) gggAATAATGCCGATACATATTTTGCCAGCCGCCAAAGCTGACATGTTTTTCAATGAGTTTCATCAGTCATTATCTCAGGGTTAATCCCCCGGACGGCTGCCCGGGGTGAGTATTAAGAACCCCCGCCTGAAGTGGACGGGGTAATCCTGCGGGAAATCAGTAACGAATTACGGTTCGAATGGAGTTGCCTTCATGCATCAGGTCGAAGGCGTCATTAATGTCATCCAGGCTCATGGTATGCGTGACAAAc < 1:144535/251‑1 (MQ=255) ccGATACATATTTTGCCAGCCGCCAAAGCTGACATGTTTTTCAATGAGTTACATCAGTCATTATCTCAGGGTTAATCTCCCGGACGGCTGCCCGGGGCGAGTATTCAGAACCCCCGCCTGACGTGGAAGGGGTAAACCTGCGGGAAATTAGTAACGAATTACGGTTCGAATGGATTTGCCTTCCTGCATCAGGTCGAAGGCGTCATTAATTTCATCCAGGCACATGGTATGCGTGACAAACGGTTcc > 1:171391/1‑247 (MQ=255) nnnnnnnnnngcnnnnNAAGNTGACATGTTTTTCAATGAGTTTCATCAGTCATTATCTCAGGGTTAATCCCCCGGACGGCTGCCCGGGGAGAGTATTAAGAACCCCCGCCTGAAGTGGACGGGGTAAACCTGCGGGAAATCAGTAACGAATTAc < 2:102524/144‑1 (MQ=255) gccAACGCTGACATGTTTTTCAATGAGTTTCATCAGTCATTATCTCAGGGTTAATCCCCCGGACGGCTGCCCGGGGAGAGTATTAAGAACCCCCGCCTGAAGTGGACGGGGTAAACCTGCGGGAAATCAGTAACGAATTACGGTTCGAATGGATTTGCCTTCATGCATCAGGTCGAAGGCGTCATTAATTTCATCCAGGCTCATGGTATGCGTGACAAACGGTTCCAGATCGATATCACCTTTCATCGCAt > 1:132476/1‑251 (MQ=255) ccAAAGCTGACATGTTTTTCAATGAGTTTCATCAGTCATTATCTCAGGGTTAATCCCCCGGACGGCTGCCCGGGGAGAGTATTAAGAACCCCCGCCTGAAGTGGACGGGGTAAACCTGCGGGAAATCAGTAACGAATTACGGTTCGAATGGATTTGCCTTCATGCATCAGGTCGAAGGCGTCATTAATTTCATCCAGGCTCATGGTATGCGTGACAAACGGTTCCAGATCGATATCACCTTTCATCGCATc > 1:156275/1‑251 (MQ=255) tttCAATGAGTTTCATCAGTCATTATCTCAGGGTTAATCCCCCGGACGGCTGCCCGGGGAGAGTATTAAGAACCCCCGCCTGAAGTGGACGGGGTAAACCTGCGGGAAATCAGTAACGAATTACGGTTCGAATGGATTTGCCTTCATGCATCAGGTCGAAGGCGTCATTAATTTCATCCAGGCTCATGGTATGCGTGACAAACGGTTCCAGATCGATATCACCTTTCATCGCATCTTCAACCATGCCCgg < 1:138152/250‑1 (MQ=255) | CCGCGTAACGCTGCATCCCCGATTTAGTAATGAAATTCTGCTCGTTGCAGGTCAGGCCTGAAAGCCAGTACAGCACCGGCAATTTTTCATTCGCGGCTTTTGGTGGGAGATAGACGCCGACATTCATTTCACATTTCAGTGATTGGGAATAATGCCGATACATATTTTGCCAGCCGCCAAAGCTGACATGTTTTTCAATGAGTTCCATCAGTCATTATCTCAGGGTTAATCCCCCGGACGGCTGCCCGGGGAGAGTATTAAGAACCCCCGCCTGAAGTGGACGGGGTAAACCTGCGGGAAATCAGTAACGAATTACGGTTCGAATGGATTTGCCTTCATGCATCAGGTCGAAGGCGTCATTAATTTCATCCAGGCTCATGGTATGCGTGACAAACGGTTCCAGATCGATATCACCTTTCATCGCATCTTCAACCATGCCCGG > NC_000913/378161‑378602 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |