| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,214,513 | C→T | Q321Q (CAG→CAA) | bluF ← | blue light‑ and temperature‑regulated antirepressor BluF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,214,513 | 0 | C | T | 88.9% | 13.0 / ‑4.8 | 9 | Q321Q (CAG→CAA) | bluF | blue light‑ and temperature‑regulated antirepressor BluF |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (6/2); minor base G (0/1); total (6/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.68e-01 | |||||||||||
GCAAACAGATCTCCCTGAAACATCTCAATTCCTGCGGATTCAAGCCACATCCACTCTTCTGGTGTTGCCACGCCCATAGCACTGACTTGAATTTCAAGTGATGTACAGCATTTTATGATCGCCTGAATAATTGCCTGCCGTGGCCCACTTTTATGAACATTGGTAATCAATTCCTGACTGATTTTAATTCTGTCAGGCTGGAAGCGTGACAGGAGTAACAAACCAGCAAAACCTGCGCCAAAATGATCAATTGCTACACTGATACCAGCAGCCTTTAGCGATTTAATCGCTTCGGCAAACTCATCAAACCGAGATATGACTTCACTTTCAGTAAATTCAACGATGATTTGTTCAGGCACCAGAGCATTGGCCTTTATTTCATTAAGTAAAAAAGAGACTGCGTCAGG > NC_000913/1214316‑1214722 | gcAAACAGATCTCCCTGAAACATATCAATTCCTGCGGATCCAAGCCACCTCCTCTCTTCTGGTGTGTCCACGCCCATAGCACTGACTTGAATATCAAGTGATGTACAGCATTTTATGATCGCCTTAATAAGTGCCTGCCGTGGCCCACCTTTATGAACATGGGTAAGCAATTCCTGACTGATTTGGATGCTGGCAGTGAGGAAGCGTGACAGGAGTAACAAACCAGCAAAACCTGCGCCAAAATGATCAAt < 1:155261/251‑1 (MQ=255) ntcCCTGAAACATCTCAATTCCTGCGGATTCAAGCCACATCCACTCTTCTGGTGTTGCCACGCACATAGCACTGACTTGAATTTCAAGTGATGTACAGCATTTTATGATCGACTGAATAATTGCCTGCCGTGGCCCCCTTTTATGAACATTGGTAATCAATTCCTGACTGATTTTAATTCTGTCAGGTTGGAAGCGTGACAGGCGTAACAAAcc > 1:17559/2‑214 (MQ=255) ccACTCTTCTGGTGTTGCCACGCCCATAGCACTGACTTGAATGTCAAGTGATGTACAGCATTTTATGATCGCCTGAATAATTGCCTGCCGTGGCCCACTTTTATGAACATTGGTAATCAATTCCTGACTGATGTTAATTCTGTCAGGTTGGAAGCGTGACAGGAGGAACAAACCAGCAAAACCTGCGCCAAAATGAGCAATTGCTACACTGATACCAGCAGCCTTTAGCGATTTAATCGCTTCGGCAAAc < 1:93705/250‑1 (MQ=255) gCCTGAATAATTGCCTGCCGTGGCCCACTTTTATGAACATTGGTAATCAATTCCTGACTGATTTTAATTCTGTCAGGTTGGAAGCGTGACAGGAGTAACAAACCAGCAAAACCTGCGCCAAAATGATCAATTGCTACACTGATCCCAGCAGCCTTTAGCGATTTAATCGCTTCGGCAAACTCATCAAACCGAGATATGACTTCACTTTCAGTAAATTCAACGATGATTTGTTCAGGCACCAGAGCATTGNc < 1:131494/251‑1 (MQ=255) cctgccGTGGCCCACTTTTATGAACATTGGTAATCAATTCCTGACTGATTTTACTTCTGTTCGGTTGGCAGCGTGACCGGAGTAACAAACCCGCAAACACTGCGCCACAATGATCACTTGCTACACTGATACCAGCAGCCTTTAGCGACTTAATCGCTTTGGCAAACTCATCCAACCGAGATATGACTTCACTTTCAGTAAATTCAACGATGATTTGTTCAGGCACCAGAGCATTGGCCTTTATTTCAtt > 1:167248/1‑250 (MQ=255) actgccGTGGCCCACTTTTATGAACATTGGTAATCAATTCCTGACTGATTTTAATTCTGTCAGGTTGGAAGCGTGACAGGAGTAACAAACCAGCAAAACCTGCGCCAAAATGATCAATTGCTACACTGATACCNGCANNNnnt > 2:103785/2‑143 (MQ=255) cccACTTTTATGAACATTGGTAATCAATTCCTGACTGATTTTAATTCTGTCAGGTTGGAAGCGTGACAGGAGTAACAAACCAGCAAAACCTGCGCCAAAATGATCAATTGCTACACTGATACCAGCAGCCTTTAGCGATTTAATCGCTTCGGCAAACTCATCAAACCGAGATATGACTTCACTTTCAGTAAATTCa > 1:3682/1‑196 (MQ=255) aaCATTGGTAATCAATTCCTGACTGATTTTAATTCTGTCAGGTTGGAAGCGTGACAGGAGTAACAAACCAGAAAAACCTGCGCCAAAATGATCAATTGCTACACTGATACCAGCAGCCTTTAGCGATTTAATCGCTTCGGCAAACTCATCAAACCGAGATATGACTTCACTTTCAGTAAATTCAACGATGATTTGTTCAGGCACCAGAGCATTGGCCTTTATTTCATTAAGTAAAAAAGAGACTGCGTc > 1:152159/1‑249 (MQ=255) aCATTGGTAATCAATTCCTGACTGATTTTAATTCTGTCAGGTTGGAAGCGTGACAGGAGTAACAAAACAGCAAAACCTGCGACAAAATGATCAATTGCTACACTGATACCAGCAGCCTTTAGCGATTTAATCGCTTCGGCAAACTCATCAAACCGAGATATGACTTCACTTTCAGTAAATTCAACGATGATTTGTTCAGGCACCAGAGCATTGGCCTTTATTTCATTAAGTAAAAAAGAGACTGCGTCAgg > 1:147216/1‑251 (MQ=255) | GCAAACAGATCTCCCTGAAACATCTCAATTCCTGCGGATTCAAGCCACATCCACTCTTCTGGTGTTGCCACGCCCATAGCACTGACTTGAATTTCAAGTGATGTACAGCATTTTATGATCGCCTGAATAATTGCCTGCCGTGGCCCACTTTTATGAACATTGGTAATCAATTCCTGACTGATTTTAATTCTGTCAGGCTGGAAGCGTGACAGGAGTAACAAACCAGCAAAACCTGCGCCAAAATGATCAATTGCTACACTGATACCAGCAGCCTTTAGCGATTTAATCGCTTCGGCAAACTCATCAAACCGAGATATGACTTCACTTTCAGTAAATTCAACGATGATTTGTTCAGGCACCAGAGCATTGGCCTTTATTTCATTAAGTAAAAAAGAGACTGCGTCAGG > NC_000913/1214316‑1214722 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |