| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,849,728 | G→A | E298K (GAA→AAA) | sppA → | protease IV, a signal peptide peptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,849,728 | 0 | G | A | 87.5% | 14.1 / NA | 8 | E298K (GAA→AAA) | sppA | protease IV, a signal peptide peptidase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (3/4); minor base C (1/0); total (4/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01 | |||||||||||
GCTTGAGGGTTTAACCAAAACCGGTGGCGATACCGCGAAATATGCACTGGAAAACAAGCTGGTCGATGCACTGGCATCGAGTGCGGAAATCGAAAAAGCACTGACCAAAGAATTCGGCTGGAGTAAGACTGATAAAAATTATCGCGCCATCAGTTATTACGATTACGCATTGAAAACGCCGGCAGATACCGGTGACAGCATCGGTGTCGTCTTTGCTAATGGCGCAATTATGGATGGCGAGGAAACTCAGGGGAATGTTGGCGGTGATACCACTGCGGCACAAATCCGCGACGCTCGCCTTGACCCGAAAGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTT > NC_000913/1849619‑1849973 | gCTTGAGGGTTTAACCAAAACCGGTGGCGATACCGCGAAATATGCACTGGAAAACAAGCTGGTCGATGCAATGGCATCGAGTGCGGAAATCGAAAAAGCACTGACCAAAAAATTCGGCTGGAGTAAGACTGATAAAAATTATCGCGCCATCAGTTATTACGATTACGCATTGAAAACGCCGGCAGATACCGGTGACAGCATCGGTGTCGTCTTTGCTAATGgcgc > 1:123022/1‑225 (MQ=255) gggTTTAACCAAAACCGGTGGCGATACCGCGAAATATGCACTGGAAAACAAGCTGGTCGATGCACTGGCATCGAGTGCGGAAATCGAAAAAGCACTGACCAAAAAATTCGGCTGGAGTAAGACTGATAAAAATTATCGCGCCATCAGTTATTACGATTACGCATTGAAAACGCCGGCAGATACCGGTGACAGCATCGGTGTCGTCTTTGCTAATGGCGCAATTATGGATGGCGAGAAAACTCAgg < 1:124135/245‑1 (MQ=255) ntttAAACAAAACCGGTGGCGATACCGCGAAATATGCACTGGAAAACAAGTTGGTCGATGCACTGGCATCGAGTGCGGAAATCGAAAAAGCACTGACCAAAAAATTc > 1:41999/2‑107 (MQ=255) aCCGGTGGCGATACCGCGAAATATGCACTGGAAAACAAGCTAGTCGATGCACTGGCATCGAGTGCGGAAATCGAAAAAGCACTGACCAAAAAATTCGGCTGGAGTAAGACTGATAAAAATTATCGCGCCATCAGTTATTACGATTACGCATTGAAAACGCCGGCAGATACCGGTGACAGCATCGGTGTCGTCTTTGCTAATGGCGCAATTATGGATGGCGAGAAAACTCAGGGGAATGTTGGCGGTGATAc < 1:63694/251‑1 (MQ=255) gCGATACCGAGAAATATGCACTGGAAAACAAGCTGGTAGATGCACTGGAATCGAGTGCGGAAATAGACCAAGCACTGACCACACAATTCGGCTGGAGTAAGACTGATACAACTTATCGCGCCATCAGTTATTACGATTACGCATTGAAAACGCCGGCAGATACCGGTGACAGCATCGGTGTCGTCTTTGCTAATGGCGCAATTATGGATGGCGAGCAAACTCAGGGGAATGTTGGCGGTGATACCACTGCg > 1:110029/1‑251 (MQ=255) cATCGAGGGCGGAAATCGAAAAAGCACTGACCAAAAAATTCGGCTGGAGTAAGACTGATAAAAATTATCGCGCCATCAGTTATTACGATTACGCATTGAAAACGCCGGCAGATACCGGTTACATCATCGGTGTCGTCTTTGCTAATGGCGTAATTATGGAGGGTGAGAAAACGCAGGGGAATGTTGGCGGTGATAACTCTGCGGCACAAATCCGCGACGCTCGCCTTGACCCGAAAGTGAAAGTGATTGTc < 1:23670/251‑1 (MQ=255) gCACTGACCAAAAAATTCGGCTGGAGTAAGACTGATAAAAATTATCGCGCCATCAGTTATTACGATTACGCAGTGAAAACGCCGGCAGATACCGGTGACAGCATCGGTGTCGTCTTTGCTAATGGCGCAATTatg < 1:81029/135‑1 (MQ=255) ccAAAAAATTCGGCTGGAGTACGACTGATAAAAATTATCGCGCCATCAGTTATTACGATTACGCATTGAAAACGCCGGCAGATACCGGTGACAGCATCGGTGTCGCCTTTGCTAATGGCGCAATTATGGATGGCGCGAAAACTCAGGGGAATGTTGGCGGTGATACCCCTGCGGCACAAATCCGCGACGCTCGCCTTGACCCGAAAGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGtt > 1:63831/1‑251 (MQ=255) | GCTTGAGGGTTTAACCAAAACCGGTGGCGATACCGCGAAATATGCACTGGAAAACAAGCTGGTCGATGCACTGGCATCGAGTGCGGAAATCGAAAAAGCACTGACCAAAGAATTCGGCTGGAGTAAGACTGATAAAAATTATCGCGCCATCAGTTATTACGATTACGCATTGAAAACGCCGGCAGATACCGGTGACAGCATCGGTGTCGTCTTTGCTAATGGCGCAATTATGGATGGCGAGGAAACTCAGGGGAATGTTGGCGGTGATACCACTGCGGCACAAATCCGCGACGCTCGCCTTGACCCGAAAGTGAAAGCGATTGTCCTGCGTGTTAATAGCCCAGGCGGCAGCGTT > NC_000913/1849619‑1849973 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |