| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 623,386 | G→A | G363S (GGC→AGC) | entS → | enterobactin exporter EntS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 623,386 | 0 | G | A | 85.7% | 13.8 / NA | 7 | G363S (GGC→AGC) | entS | enterobactin exporter EntS |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (2/4); minor base C (1/0); total (3/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCACGCTGGGATCGTTCCTCGCCATTGGTCTGTTTGGCCTGATGCCGATGTGGATTTTAGGCGTGGTTTGTCTGGCGCTGTTCGGCTGGTTGAGTGCGGTCAGCTCGTTGCTGCAATACACAATGCTGCAAACGCAAACCCCGGAAGCGATGTTAGGGCGGATTAACGGTTTGTGGACGGCGCAGAACGTGACGGGCGATGCCATAGGCGCGGCGCTGCTGGGTGGTTTGGGCGCGATGATGACACCGGTTGCTTCCGCAAGCGCGAGCGGTTTTGGTTTGTTGATTATCGGCGTGTTGTTATTGCTGGTGCTGGTGGAGTTGCGACATTTTCGCCAGACGCCGCCGCAGGTGACAGCGTCCGACAGTTAATGCTTAAAACAGCGCCTTAAGCCTATCCAGCACTTGCAT > NC_000913/623180‑623589 | ccacggtgggatctggacTCGCCATTGTGCTGTTGGGCCTGATGCCGATGTGGATTTGAGTCGTGGGTTGTCTTGCGCGGTTCGTCTGGTTGAGTGCGGTCAGCTCGGTGCTGCAATACACAATGCTGCAAACGCAAACCCCGGAAGCGATTGTAGGGCGGATTAACGGTTTGTGGACGGCTCAGAACGTGACGGGCGATTCCATAAGCGCGGCGATGCTGGGTGGTTTGGGCGCGATGATGACACCGGtt < 1:123966/234‑1 (MQ=255) gATCGTTCCTCGCCATTGGTCTGTTTGGACTGATGCCGATGTGGATTTTCGGCGGAGTTAGCCTGGCGCTGTTCGGCTGGGTGAGTGCGGTCAGATCGTTGATGCAATACACAATGCTGCAAACGCAAACCCCGGAAGAGATGTTAGGGCGGATTAAAGGATTGTGTACGGAGCAGAACGAGACGGGCGATGCCATACGCTCGGCGATGCTGGGGGGTTTGGGCGAGATGATGACACCGGGTGCTTCCGc > 1:123875/1‑250 (MQ=255) ccTGATGCCGATGTGGATTTTAGGCGTGGTTTGTCTGGCGCTGTTCGGCTGGTTGAGTGCGGTCAGCTCGTTGCTGCCATACACAATGCTGCAAACGCAAACCCCGGAAGCGATGTTAGGGCGGATTAACGGTTTGTGGACGGCGCAGACCGTGACGGGCGATGCCATAAGCGCGGCGCTGCTGGGTGGTTTGGGCGCGATGATGACACCGGTTGCTTCCGCAAGCGCGAGCGGTTTTGGTTTGTTGAtt > 1:68304/1‑250 (MQ=255) gCCGATGTGGATTTTAGGCGTGGTTTGTCTGGCGCTGTTCGGCTGGTTGAGTGCGGTCAGCTCGTTGCTGCAATACACAATGCTGCAAACGCAAACCCCGGAAGCGATGTTAGGGCGGATTAACGGTTTGTGGACGGCGCAGAACGTGACGGGCGATGCCATAAGCGCGGCGCTGCTGGGTGGGTTGGGCGCGATGATGACACCGGTTGCTTCCGCAAGCGCGAGCGGTTTTGGTTTGTTGATTATCGGc < 1:64447/250‑1 (MQ=255) gTTGCTGCAATACACATTGCGGCAAACGCAAACCCCGGAAGCGATGTTAGGGCGGATTAACGGTTTGTGGACGGCGCAGAACGTGACGGGCGATGCCATAAGCGCGGCGCTGCGGGGGGGTTTGGGCGCGATGATGACACCGTTGGCTGCCGCAAGCGGGGGCGGTTTTGGTTTGTTGATTATCGGGGTGTTGTTATTGCTGGTGCTGGTGGAGTTGCGACATTTTCGCCAGACGCCGCCGCAGGTGACAg < 1:155998/251‑1 (MQ=255) ggATTAACGGTTTGTGGACGGCGCAGAACGTGGCGGGCGATGCCATAAGCGCGGCTCTGCTGGGTGGTTTGGGCGCGATGATGACACCGGTTGCTTCCGCAAGCGCGAGCGGTTTTGGTTTGTTGATTATCGGCGTGTTGTTATTGCTGGTGCTGGGGGAGTTGCGACATTTTCGCCAGACGCCGCCGCAGGTGACAGCGTCCGACAGTTAATGCTTAAAACAGCGCCTTAAGCCTATCCAGCACTTGCAt < 1:68119/251‑1 (MQ=255) gACGGCGCAGAACGTGACGGGCGATGCCATAAGCGCGGCGCTGCTGGGTGGTTTGGGCGCGATGATGACACCGGTTGCTTCCGCAAGCGCGAGCGGTTTTGGTTTGTTGATTATCGGCGTGTTGTTTTTGCTGNGGCnnnnnggnnnnnnnnnn > 2:99792/1‑143 (MQ=255) | CCACGCTGGGATCGTTCCTCGCCATTGGTCTGTTTGGCCTGATGCCGATGTGGATTTTAGGCGTGGTTTGTCTGGCGCTGTTCGGCTGGTTGAGTGCGGTCAGCTCGTTGCTGCAATACACAATGCTGCAAACGCAAACCCCGGAAGCGATGTTAGGGCGGATTAACGGTTTGTGGACGGCGCAGAACGTGACGGGCGATGCCATAGGCGCGGCGCTGCTGGGTGGTTTGGGCGCGATGATGACACCGGTTGCTTCCGCAAGCGCGAGCGGTTTTGGTTTGTTGATTATCGGCGTGTTGTTATTGCTGGTGCTGGTGGAGTTGCGACATTTTCGCCAGACGCCGCCGCAGGTGACAGCGTCCGACAGTTAATGCTTAAAACAGCGCCTTAAGCCTATCCAGCACTTGCAT > NC_000913/623180‑623589 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |