| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,975,714 | G→A | G190D (GGC→GAC) | wecE → | dTDP‑4‑dehydro‑6‑deoxy‑D‑glucose transaminase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,975,714 | 0 | G | A | 90.0% | 17.3 / NA | 10 | G190D (GGC→GAC) | wecE | dTDP‑4‑dehydro‑6‑deoxy‑D‑glucose transaminase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (5/4); minor base C (1/0); total (6/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01 | |||||||||||
CTGATTGAAGCGGCGATCACCGACAAAACGCGCGTTATCGTGCCGGTCCATTACGCGGGTGTGGCCTGCGAAATGGACACCATTATGGCGTTGGCGAAAAAGCATAATTTGTTTGTGGTAGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCACTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGCGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTAATCGAACGAGCCGAGATCATCCGTGAAAAGGGCACTAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAATATACCTGGCGCGATATTGG > NC_000913/3975476‑3975834 | cTGATTGAAGCGGCGATCACCGACAAAACGCGCGTTATCGTGCCGGTCCATTACGCGGGTGTGGCCTGCGAAATGGACACCATTATGGCGTTGGCGAAAAAGCATAATTTGTTTGTGGTAGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCACTGGGAACCATTGGTCATATTGGCTGCTT‑AGCTTCCATGAAACCAAAAACTACACGGCGGGCGGTGAAGGCGACGCGACGCTGAtt > 1:71269/1‑251 (MQ=255) gAAGCGGCGATCACCGCCAAAACGCGCGTTAACGGGCCGGTCAATTACGCGGGGGTGGCCTGCGAAATGGACACCATTATGGCGTTGGCGAAAAAGCATAATTTGTTTGTGGTAGAAGATGCCGCTCAGGGCGTGATGTCCACTTCCAAAGGGCGTGCACTGGAAACCATTGTTCATATTGCCTGCTTGAGCTGCCATGAAACCAAAAACAACACGGCGGGCGGTGAAGGCGACGCGACGCTGATTAACg < 1:164610/250‑1 (MQ=255) cGGTCCATGACGCGGGTGTGGCTTGCGAAATGGACACCATTATGGCGTTGGCGAAAAAGCATAATGGGTGTGTGGTAGAAGATGCCGCTCAGGGCGGGATGGCCACTTACAAAGGGCGTGCACTGGGAGCCATGGGTCATATTGGCGGCTTTAGCTGCCAGGAAACCAAAAACTACGCGGCGGGCGGTGAAGGCGACGCGCCGCTGATTAACGATAAAGCGTTAATCGAACGAGc < 1:78679/235‑1 (MQ=255) ggTGTGGCCTGCGAAATGGACACCATTATGGCGTTGGCGAAAAAGCATAATTTGTTTGTGGTAGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCACTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGCGGTGAAGGCGACGCGACGCTGATTAACGATAAAGCGTTAATCGAACGAGCCGAGATCATCCGTGAAAAGGGCACTAACCg > 1:3497/1‑251 (MQ=255) gtgGCCTGCGAAATGGACACCATTATGGCGTTGGTGAAAAAGCATAATTTGTTTGTGGTAGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCACTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGCGGTGAAGGCGACGCGACGCTGATTAACGATAAAGCGTTAATCGAACGAGCCGAGCTCATCCGTGAAAAGGGCACTAACCGc > 1:154406/1‑249 (MQ=255) ncATTATGGCGTTGGCGAAAAAGCATAATTTGTTTGTGGTAGAAGATGCCGCTCAGGGCGTGATGTCAACTTACAAAGGGCGCGCACTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGCGGTGAAGGCGACGCGACGCTGATTAACGATAAAGCGTTAATCGAACGAGCCGAGATCATCCGTGAAAAGGGCACTAACCGCAGCCAGTTCTTCCGTGGTc > 1:15857/2‑249 (MQ=255) aTGTCCACTTACAAAGGGCGTGCACTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTCCACGGCGGGCGGTGAAGGCGACGCGACGCTGATTAACGATAAAGCGTTAATCGAACGAGCCGAGATCATCCGTGAAAAGGGCACTAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGCTAAATATAc > 1:61269/1‑203 (MQ=255) tgctgctTTAGCTTCCATGAAACCAAAAACTACCCGGCGGGCGGTGAAGGCGACGCGACGCTGATTAATGATAAAGCGTTAATCGAGCGAGCCGAGATCATCCTTGAAAAGGGCACTAACCGCAGCCAGTTCTTCCGTGGTCAGTTCGATAAATATCCCTGGCGCGATATTgg < 1:37083/172‑1 (MQ=255) tgctTNNGCNNNCANNAAACCAAAAACTACACGGCGGGCNGTGAAGGCGCCGCGACGCTGATTAACg > 2:124044/1‑67 (MQ=255) ggctTTAGCTTCCTTGAAACCAAAAACTACACGGCGGGCGGTGAAGGCGACGCGACGCTGATTAACg < 1:124044/66‑1 (MQ=255) | CTGATTGAAGCGGCGATCACCGACAAAACGCGCGTTATCGTGCCGGTCCATTACGCGGGTGTGGCCTGCGAAATGGACACCATTATGGCGTTGGCGAAAAAGCATAATTTGTTTGTGGTAGAAGATGCCGCTCAGGGCGTGATGTCCACTTACAAAGGGCGTGCACTGGGAACCATTGGTCATATTGGCTGCTTTAGCTTCCATGAAACCAAAAACTACACGGCGGGCGGTGAAGGCGGCGCGACGCTGATTAACGATAAAGCGTTAATCGAACGAGCCGAGATCATCCGTGAAAAGGGCACTAACCGCAGCCAGTTCTTCCGTGGTCAGGTCGATAAATATACCTGGCGCGATATTGG > NC_000913/3975476‑3975834 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |