New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4135180 =	3 (0.370)	11 (1.340)	6/334	0.2	78.6%	coding (1346/2181 nt)	katG	catalase/hydroperoxidase HPI
	?	NC_000913	4498181 =	NA (NA)					noncoding (1/1331 nt)	IS2	repeat region

AGGCTTTACCAGACTCTTTCTGGATTTTCTCCAGAACAGGCAGAGCACGAACGGCTGCGGCGTTCACATCCCAGTCGCGCTGCGGCATTAATGCCAGACGCGCACCGTTGGCACCACCGCGTTTGTCGCCACCACGGAAGGTAGAAGCAGATGCCCAGGCCACCGATACCAGCTCACT‑AACAGACAGACCAGAATCCGCAATCGCGAATTTCAGATCGATAATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4135404‑4135180 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTT  >  NC_000913/4498181‑4498408                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGGCTTTACCAGACTCTTTCTGGATTTTCTCCAGAACAGGCAGAGCACGAACGGCTGCGGCGTTCACATCCCAGTCGCGCTGCGGCATTAATGCCAGTCGCGCACCGTTGGCACCACCGCGTTTGTCGCCACCACGGAAGGTAGAAGCAGATGCCCAGGCCACCGATACCAGCTCACT‑AACAGACAGACCAGAATCCGCAATCGCGAATTTCAGATCGATAATGTTAGACTGGCCCCCTGAATCTCCAGAn                                                                                                                                                                                                            <  1:31022/251‑2   GCTTTACCAGACTCTTTCTGGATTTTCTCCAGAACAGGCAGAGCACGAACGGCTGCGGCGTTCACATCCCAGTCGCGCTGCGGCATTAATGCCAGACACGCACCGTTGGCACCACCGCGTTTGTCGCCACCCCGGAAGGTAGAAGCAGATGCCCAGGCCCCCGATACCAGCTCACT‑AACAGACAGACTAGACTCCGCAATCGCGAATTTCAGATCGATAATGTTAGACTGGCCCCCTGAATCTCCAGACA                                                                                                                                                                                                           >  1:71159/1‑250      ttgccatACTCTTTCTGGATTTTCTCCAGAACAGGCAGAGCACGAACGGCTGCGGCGTTCACATCCCAGTCGCGCTGCGGCATTAATGCCAGACGCGCGCCGTTGGCACCACCGCGTTTGTCGCCACCACGGAAGGTAGAAGCAGATGCCCAGGCCACCGATACCAGCTCACT‑AACAGACAGACCAGAATCCGCAATCGCTAATATCAGAGCGATACTGTTATACTGGCCCCCTGAATCTCCAGACAAn                                                                                                                                                                                                         <  1:49108/242‑2                                          AGAGCACGAACGGCTGCGGCGTTCACATCCCAGTCGCGCTGCGGCATTAATGCCAGACGCGCACCGTTGGCACCACCGCGTTTGTCGCCACCACGGAAGGTAAAAGCAGATGCCCAGGCCACCGATACCAGCTCACT‑AACAGACAGACCAGAATCCGCAATCGCGAATTTCAGATCGATAATGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTT                                                                                                                                                                   <  1:166886/251‑1                                                                                      CATTAATGCCAGACGCGCACCGTTGGCACCGCCGCGTTTGTCGCCACCACGGAAGGTAGAACCAGATGCCCAGGCCACCGCAACCAGCTCACTCAAC‑GACAGACCAGCATCCGAAATCGCGAATCTCCGATCGCTAATGTTAGACTGGCCCCCTGACTCTACAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCC                                                                                                                       >  1:93900/1‑251                                                                                                    GCGCACCGTTGGCACCACCGCGTTTGTCGCCACCACGGAAGGTAGAAGCAGATGCCCAGGCCACCGATACCAGCTCACT‑AACAGACAGACCAGAATCCGCAATCGCGAATTTCAGATCGATAATGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGAn                                                                                                         <  1:102405/251‑2                                                                                                                                  CACCACGGAAGGTAGAAGCAGATGCCCAGGCCACCGATACCAGCTCACT‑AACAGACAGACCAGAATCCGCAATCGCGAATTTCAGATCGATAATGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTG                                                                           >  1:35853/1‑251                                                                                                                                                nAAGCAGATGCCCAGGCCACCGATACCAGCTCACT‑AACAGACAGACCAGAATCCGCAATCGCGAATTTCAGATAGATAATGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGAGATAGTCTTACTACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACCGGACACGATCGCACTTGTTCAGCAGAGCTTT                                                             >  1:14843/2‑251                                                                                                                                                                                          nAGACCAGAATCCGCAATCGCGAATTTCAGATCGATAATGTTCGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAG                                                                                                                   >  1:30585/2‑156                                                                                                                                                                                                 GAATCCGCAATCGCGAATTTCAGATCGATTATGTTAGACTGGCCCCCTGAATTTCCAGACAACCAATATCACTGAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGCCTTTGTCCCGGAGATACGCAGGCGGCGTACCACACAGGAACCGATAGCAAGTGTTCAGCAGAGCTTTGAACCTGGTATGACGTTCTCCCTCGTTGCCCGGCAACATGGAGTAGC              >  1:3922/1‑250                                                                                                                                                                                                            CGCGAATTTCAGATCGATAATGTTAGACTGGCCCCCTGAATCTCCAGACAACCAAGATCTCTTAAATAAGTGATAGTCTTAATACTAGTTTTGAGACTAGTCAGTGGAGAACAGATTATGGATGTCTTAGGGCCGTAGAAACGCAGACGGCGGACCACACAGGAAAAGATCGCAAGTGTGCAGCAGAGTCTGGAACCGGTGATGACGGTGTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTT  <  1:67552/251‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGGCTTTACCAGACTCTTTCTGGATTTTCTCCAGAACAGGCAGAGCACGAACGGCTGCGGCGTTCACATCCCAGTCGCGCTGCGGCATTAATGCCAGACGCGCACCGTTGGCACCACCGCGTTTGTCGCCACCACGGAAGGTAGAAGCAGATGCCCAGGCCACCGATACCAGCTCACT‑AACAGACAGACCAGAATCCGCAATCGCGAATTTCAGATCGATAATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4135404‑4135180 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTT  >  NC_000913/4498181‑4498408

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.