| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,957,435 | G→A | A129V (GCG→GTG) | ilvY ← | DNA‑binding transcriptional dual regulator IlvY |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,957,435 | 0 | G | A | 90.0% | 19.9 / NA | 10 | A129V (GCG→GTG) | ilvY | DNA‑binding transcriptional dual regulator IlvY |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (5/4); minor base C (1/0); total (6/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTCTACCGACACCTGATTACGCACCGGGCAGGGCAGCGCGGGGGCAATCAGCACTACTGCCAGATTCTCCAGCATCGAAAACGCCACTGCGCCGGGCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCAGAAGATATGTAATTCGCCAGAGAGCGACGGCCCTTGCTGATCGATGGTGTGGCGCAACTGCTGATACTGCAACAGCGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCG > NC_000913/3957269‑3957671 | cgctACCGACACCTGATTACGCACCGGGCAGGGCAGCGCGGGGGCAATCAGCACTACTGCCAGATTCTCCAGCATCGAAAACGCCACTGCGCCGGGCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCACATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAAGCGGCGGCAGATGGCTGTAGGCAg < 1:59111/249‑1 (MQ=255) ccGGGCAGGGCAGCGCGGGGGCAATCAGCACTACTGCCAGATTCTCCAGCATCGAAAACGCCACTGCGCCGGGCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCACATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCAGAAGATATGt > 1:93228/1‑251 (MQ=255) nggcagggcagCGCGGGGGCAATCAGCACTACTGCCAGATTCTCCAGCATCGAAAACGCCACTGCGCCGGGCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCACATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCAGAAGATATGTa > 1:104025/2‑250 (MQ=255) gCCACTGCGCCGGGCACGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCACATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGc > 1:36909/1‑136 (MQ=255) gCCACGGCGCCGGGCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCNGCTTCACCANNGANCACCGNTNNNANNNCANCTGCCACATCACCAGTAGTNAGNNTAAGCTNCACCGACGGGTGTTCCGCGCGGAAGc < 2:36909/136‑1 (MQ=255) cACTGCGCCGGGAAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCACATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCAGAAGATATGTAATTCGCCAGAGAGCGACGGCCCTTGCTGATCGATGGTGTGGCGCAACTGCTGATACTGc > 1:54972/1‑250 (MQ=255) gggCAAGGTTTCCGGTTTACCCGCAATCGACAGATCCGCTCCACCAGTGACCACCTTTTACATCGCATCTGCCCCATCACCAGTCGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGCTGGCTGTAGGCAGCGGTCACCGAGCAGACGATATGTAATTCGCCAGAGAGCGACGGCCCTTGCTGATCGATGGTGTGGCGCAACTGCTGATACTGCAACAGCGttt > 1:110056/1‑251 (MQ=255) aCCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCGGCCACATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTGCCGCGCGGAAGTGATCCAGAATCGGCGGCAGATGGc < 1:57912/131‑1 (MQ=255) ccaccTTTTCCATCGCATCTGCCACATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATGCAGAATCGGCGACAGATGGCTGTAGGCAGCGGTCACCGAGCAGAAGATATGTACTTCGCCAGAGAGCGACGGCCCTTGCTGATCGATGGTGTGGCGCAACTGCTGATACTGCAACAGCGTTTGCTGGGCGAAAACGCGCAGCTCTTCACCCGCTTCAGTCAGCGTCACCGTg > 1:164690/1‑251 (MQ=255) ccATCGCATCTGCCACATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCAGAAGATATGTAATTCGCCAGAGAGCGACGGCCCTTGCTGATCGATGGTGTGGCGCAACTGCTGATACTGCAACAGCGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATcn < 1:136047/251‑2 (MQ=255) | CTCTACCGACACCTGATTACGCACCGGGCAGGGCAGCGCGGGGGCAATCAGCACTACTGCCAGATTCTCCAGCATCGAAAACGCCACTGCGCCGGGCAAGGTTTCCGGTTTACCCGCAATCGCCAGATCCGCTTCACCAGTGACCACCTTTTCCATCGCATCTGCCGCATCACCAGTAGTAAGTTTAATCTCCACCGACGGGTGTTCCGCGCGGAAGCGATCCAGAATCGGCGGCAGATGGCTGTAGGCAGCGGTCACCGAGCAGAAGATATGTAATTCGCCAGAGAGCGACGGCCCTTGCTGATCGATGGTGTGGCGCAACTGCTGATACTGCAACAGCGTTTGCTGGGCGAAAACGCGCAGCTCTTCGCCCGCTTCAGTCAGCGTCACCGTGCGGTTATCG > NC_000913/3957269‑3957671 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |