| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,332,012 | G→A | intergenic (‑2215/+2324) | yfaQ ← / ← yfaT | tandem DUF2300 domain‑containing protein YfaQ/DUF1175 domain‑containing protein YfaT |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,332,012 | 0 | G | A | 91.7% | 25.1 / NA | 12 | intergenic (‑2215/+2324) | yfaQ/yfaT | tandem DUF2300 domain‑containing protein YfaQ/DUF1175 domain‑containing protein YfaT |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (4/7); minor base C (1/0); total (5/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.17e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAGTGACGGCATCCATGCCGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTACGCCCCAGCGGATAGAAAAATTTGCCGA‑TATTCGGCGCGATTTCTGGTTGCAGCGCGTAGATCATTTCATCGACCACGCCTACCGTTAGCTGCGCAGAAACAGGTTTACCTTTCAGCGACGAGGTTAATTCGACATTGACCAGTTCACCAGGCTGGTAATGGGTTTTGTCCGTTTTCACCCGGATATCCAGCTGGGGAACGGCAACTTTGATCCCGGCGTTCTGAAAACTGTACTGACCGTTACGGGTATACAGCACCGAAAAAGTGATGTTAGGCGCAAAGGAATTGCTCACTGGAACCCGGGCTTCATACTGGGTATCGT > NC_000913/2331769‑2332256 | gagtgaCGGCATCCATGCCGCGGTATCCACCTCTTCACGCCGTGGACGTTCCAGCCTTTTTACTCGCCCCTCGCTGCGGTTAGTTGCGCCAGGCGCAACAGGCTCGCTGGAGCGCGCCTGGTCGTAGCTGATACACGCCAGACTGGAATTGGTACGCACATTGTTACGCCCCAGCGGATAGAAAAATTTGCCGA‑TATTCGGCGCGATTTCTGGTTGCAGCGCGTAGATCATTTCATCGACCACACCTACCg > 1:171283/1‑251 (MQ=255) cccccTCTTCACGCCGTTGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTACGCCCCAGCGGATAGAAAAATTTGCCGA‑TATTCGGCGCGATTTCTGGTTGCAGCGCGTAGATCATTTCATCGACCACACCTACCGTTAGCTGCGCAGAAACAGGTTTAcc < 1:2647/247‑1 (MQ=255) ccACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTACGCCCCAGCGGATAGAAAAATTTGCCGA‑TATTCGGCGCGATTTCTGGTTGCAGCGCGTAGATCATTTCATCGACCACACCTACCGTTAGCTGCGCAGAAACAGGTTTAcc < 1:130165/250‑1 (MQ=255) ngTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTACGCCCCAGCGGATAGAAAAATTTGCCGA‑TATTCGGCGCGATTTCTGGTTGCAGCGCGTAGATCATTTCATCGACCACACCTACCGTTAGCTGCGCAGAAACAGGTTTACCTTTCAGCGACGAGGTTAATTc > 1:105188/2‑251 (MQ=255) gcCAGGAGCAACAGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTACGCCCCAGCGGATAGAAAAATTTGCCGA‑TATTCGGCGCGATTTCTGGTTGCAGCGCGTAGATCATTTCATCGACCACCCCTACCGTTAGCTGCGCAGAAACAGGTTTACCTTTCAGCGACGAGGTTAATTCGACATTGACCAGTTCACCAGGCTGGTAATGGGTTTTGTCCg > 1:38688/1‑251 (MQ=255) gtagcaccTGGTCGTAGCTGAAACCCGACGGAGTGGAGCTGGAACGCAACTTGTTACGCCCACGCGGATAGAACCATTTACTGACTAT‑CGGCGCTATTTCTGGTTGCAGCGCGTAGATCGTTTCATCGCCCACACCTACCGTTAGCTGAGCAGAAACAGGTTTACCTTTCAGCGACGAGGTTAATTCGACATTGACCAGTTCACCTGGCTGGTAAtcgg > 1:159376/7‑216 (MQ=255) gcCTGGTCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTACGCCCCAGCGGATCGAAAAATTTGCCGA‑TATTCGGCGCGATTTCTGGTTGCAGCGCGTAGATCATTTCATCGACCACACCTACCGTTAGCTGCGCAGAAACAGGTTTACCTTTCAGCGACGAGGTTAATTCGACATTGACCAGTTCACCAGGCTGGTAATGGGTTTTGTCCGTTTTCACCCGGATATCCAGCTGGGGAAc > 1:60543/1‑251 (MQ=255) aGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTACGCCCCAGCGGATAGAAAAATTTGCCGA‑TATTCGGCGCGATTTCTGGTTGCAGCGCGTAGATCATTTCATCGACCACACCTACCGTTAGCTGCGCAGAAACAGGTTTACCTTTCAGCGACGAGGTTAATTCGACATTGACCAGTTCACCAGGCTGGTAATGGGTTTTGTCCGTTTTCACCCGGATATCCAGCTGGGGAACGGCAACTTTg < 1:157365/251‑1 (MQ=255) aaaCGACAGACTGGTGCTGGTACGCACATTGTTACGCCCCAGCGGATAGAAAAATTTGCCGA‑TATTCAGCGCGAGTTCTGGTTGCAGCGCGTAGATCATTTCATCGACCACACCTACCGTTAGCGTCGCAAAAACAGGCTTACCGTGCATCGGCGAGGTTAATTCTGCATTGACCAGCTCACCAGGCTGTTAAGGGGATTTGTCCGTTTTCATGCGGATATCCACCTGGGGAACGGCGACTTTGATcctgg < 1:85187/251‑4 (MQ=255) aaaCGACAGACTGGAGCTGGTGCGCACATTGGTACGCCCCAGCGGAGAGAAAAATTTGCCGA‑TATTCGGCGCGATTTCTGGTTGCAGCGCGTATATCATTTCATCGACCACACCTACCGTTATCTGCGCAGAAACAGGTTTTCCTTTCAGCGACGAGGTTAATTCGACATTGACCAGTTCACCAGGCGGGTAATGGGTTTTGTCCGTTTTCACCCGGATATCCAGCTGGGGAACGGCAACTTTGATCCCg < 1:28827/250‑1 (MQ=255) tNCGCNCNNGNNGATNGAAAAATTTGCCGA‑TATTCGGNNCGATTTCTGNTTGCAGCGCGTAGATCATTTCATCGACCACACCTACCGTTAGCTGCGCAGAAANAGGTTTACCNNTCNGCGACNANNNTNNNTCNACATTGACCAGTTCACCAGNCTNNTAATGGNTTTTGTCCGTTTTCACCCGGATATcc < 2:38688/191‑1 (MQ=255) gACCACACCTACCGTTAGCTGCGCAGAAACAGGTTTACCTTTCAGCGACGAGGTTAATTCGACATTGACCAGTTCACCAGGCTGGTAATTGGTTTTGTCCGTTTTCACCCGGATATCCAGCTGGGGAACGGCAACTTTGATCCCGGCGTTCTGAAAACTGTACTGACCGTTACGGGTATACAGCACCGAAAAAGTGATGTTAGGCGCAAAGGAATTGCTCACTGGAACCCGGGCTTCATACTGGGTATCgc < 1:115827/251‑2 (MQ=255) | GAGTGACGGCATCCATGCCGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGATAAACGACAGACTGGAGCTGGTACGCACATTGTTACGCCCCAGCGGATAGAAAAATTTGCCGA‑TATTCGGCGCGATTTCTGGTTGCAGCGCGTAGATCATTTCATCGACCACGCCTACCGTTAGCTGCGCAGAAACAGGTTTACCTTTCAGCGACGAGGTTAATTCGACATTGACCAGTTCACCAGGCTGGTAATGGGTTTTGTCCGTTTTCACCCGGATATCCAGCTGGGGAACGGCAACTTTGATCCCGGCGTTCTGAAAACTGTACTGACCGTTACGGGTATACAGCACCGAAAAAGTGATGTTAGGCGCAAAGGAATTGCTCACTGGAACCCGGGCTTCATACTGGGTATCGT > NC_000913/2331769‑2332256 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |