| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,176,651 | C→T | S185N (AGC→AAC) | gatY ← | tagatose‑1,6‑bisphosphate aldolase 2 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,176,651 | 0 | C | T | 90.9% | 14.9 / NA | 11 | S185N (AGC→AAC) | gatY | tagatose‑1,6‑bisphosphate aldolase 2 |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (3/7); minor base G (0/1); total (3/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.49e-01 | |||||||||||
CGGATTTAGCCGACTGCAAATAATCCCGGGGATCGGTCGCTTCAGGGTGCTCGGTCAGGTAATTTTTTAACGCCTGCGAGAAGGCATTTTTCAGCTCCGTTGCAACGTTGATTTTGCATATCCCCAGTTTGATGGTTTGCTGAATATCCTTAGTCGATAACCCTGACGCGCCATGCAGCACCAGCGGTAAGTTCACCCACTGGCGAATGTTCTCCAGTCTAGAAAAATCAAGCGCCGGTGCGCTGGCATACATCCCATGAGCCGTGCCGATGGCGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGAT > NC_000913/2176409‑2176831 | cGGATTTAGCCGACTGCAAATAATCCCGGGGATCGGTCGCTACAGGGTGCTCGGTCAGGAAATTTTTTAACGCCAACGAGAAGGCATTTTTCAGCACCGTTGCAACGTTGATTTTGCATATCCCCAGATTGATGGATTGCTGAATATCCTTAGTCGATAACCCTGACGCGCCATGCAGCACCAGCGGTAAGTTCACCCACTGGCGAATGTTCTCCAGTCTAGAAAAATCAAGCGCCGGTGCGTTGGCATAc > 1:150435/1‑251 (MQ=255) ttAGCCGACTGCAAATAATCCCGGGGATCGGTCGCTTCAGGGTGCTCGGTCAGGTAATTTTTTAACGCCTGCGAGAAGGCATTTTTCAGCTCCGTTGCAACGTTGATTTTGCATATCCCCAGTTTGATGGTTTGCTGAATATCCTTAGTCGATAACCCTGACGCGCCATGCAGCACCAGCGGTAAGTTCACCCACTGGCGAATGTTCTCCAGTCTAGAAAAATCAAGCGCCGGTGCGTTGGCATACATcn < 1:99942/250‑2 (MQ=255) ggATCGGTCGCTTCAGGGTGCTCGGTCAGGTAATTTTTTAACGCCTGCGAGAAAGCATTTTTCAGATCCGTTGCAACGTTGATTTTGCATATCCCCAGTTTGATGGATTGCTGAATATACTTAGTCGATAACACTGACGCGCCATGCAGCCCCAGCGGGAAGTTCCCCCACTGGCGAATGTTCTCCAGTCTAGAAAAATCAAGCGCCGGTGCGTTGGCATACATCCCATGAGCCGTGCCGATGGCGACCGc > 1:159183/1‑251 (MQ=255) cTTCAGGGTGCTCGGTCAGGTAATTTTTTAACGCCTGCGAGAAGGCATTTTTCAGCTCCGTTGCAACGTTGATTTTGCATATCCCCAGTTTGATGGTTTGCTGAATATCCTTAGTCGATAACCCTGACGCGCCATGCAGCACCAGCGGTAAGTTCACCCACTGGCGAATGTTCTCCAGTCTAGAAAAATCAAGCTCCGGGGCGGTGGCATACATCCCAGTAGCCGTGCCGATGGCgn < 1:49226/237‑2 (MQ=255) gTCAGGTAATTTTTTAACGCCTGCGAGAAGGCATTTTTCAGCTCCGTTGCAACGTTGATTTTGCATATCCCCAGTTTGATGGTTTGCTGAATATCCTTAGTCGATAACCCTGACGCGCCATGCAGCACCAGCGGTAAGTTCACCCACTGGCGAATGTTCTCCAGTCTAGAAAAATCAAGCGCCGGTGCGTTGGCATACATCCCATGAGCCGTGCCGATGGCGACCGCCAGGGAATCAATTCCGGTTGc < 1:51982/248‑1 (MQ=255) ttAACGCCTGCGAGAAGGCATTTTTCAGCTCCGTTGCAACGTTGATTTTGCATATCCCCAGTTTGATGGTTTGCTGAATATCCTTAGTCGATAACCCTGACGCGCTATGCAGCACCAGCGGTAAGTTCACCCACTGGCGAATGTTCTCCAGTCGAGAAAAATCAAGCGCCGGTGCGTTGGCATACATCCCATGAGCCGTGCCGATGGCGACCGCCAGGGAATCAATTCCGGTTGCTTCGGCaatgttacg < 1:36542/250‑8 (MQ=255) gagaAGGCATTTTTCAGCTCCGTTGCAACGTTGATTTGGCATATCCCCAGTTTGATGGTTTGCTGAATATCCTTAGTCGATAACCCTGACGCGCCATGCAGCGCCAGCGGTAAGTGCACCCACTGGCTAATGTACTCCATTCGAGAAAAATCAAGCGCCGGTGCGTTGGCATACATCCCATGAGCCGTGCCGAGGCCGACCGCCAGGGAAGCAATTCCGGTGGCCTCGGCAAATTTACGCGCCTGAGCggg < 1:112540/251‑1 (MQ=255) gATGGTTTGCTGAATATCCTTAGTCGATAACCCTGACGCGCCATGCAGCACCAGCGGTAAGTTCACCCACTGGCGAATGTTCTCCAGTCTAGAAAAATCAAGCGCCGGTGCGTTGGCATACATCCCATGAGCCGTGCCGATGGCGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTTACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGgccgc < 1:11937/251‑1 (MQ=255) gATAACCCTGACGCGCCATGCAGCACCAGCGGTAAGTTCACCCACTGGCGAATGTTCTCCAGTCTAGAAAAATCAAGCGCCGGGGCGTTGGCATACATCCCAAGATCCGGGCCGAAGGCCACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTTACGCTCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCTTTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGAc < 1:168621/251‑1 (MQ=255) aTGCAGCACCAGCGGTAAGTTCACCCACGGGCGAATGTTCTCCAGTCTAGAAAAATCAAGCGCCGGTGCGTTGGCATACATCCCATGAGCCGTGCCGATGGCGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTTACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGCCTTGCACATCATCTACCTGGCTGCTAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGAt < 1:9196/251‑1 (MQ=255) gAAAAATCAGGCGACGGTGCGTTGGCNTACATCNNATNAGCCGTGCCGCTGGCGACCNCCNNNGNNNCNCTTCCNGTNNCCTCGGCAANTTTACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCANAACATCTTCNNGGCCGCCAAGTTGCCCCAGCTNCGCNNCNNCNCTGNNa > 2:34402/1‑192 (MQ=255) | CGGATTTAGCCGACTGCAAATAATCCCGGGGATCGGTCGCTTCAGGGTGCTCGGTCAGGTAATTTTTTAACGCCTGCGAGAAGGCATTTTTCAGCTCCGTTGCAACGTTGATTTTGCATATCCCCAGTTTGATGGTTTGCTGAATATCCTTAGTCGATAACCCTGACGCGCCATGCAGCACCAGCGGTAAGTTCACCCACTGGCGAATGTTCTCCAGTCTAGAAAAATCAAGCGCCGGTGCGCTGGCATACATCCCATGAGCCGTGCCGATGGCGACCGCCAGGGAATCAATTCCGGTTGCCTCGGCAAATTCACGCGCCTGAGCGGGGTTGGTGTACAACGCATCGGCTTCATTGACTTGCACATCATCTTCCTGGCCGCCAAGTTGCCCCAGCTCCGCCTCGACGCTGACATCAAAGCGAT > NC_000913/2176409‑2176831 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |