| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 502,376 | G→A | S288F (TCC→TTC) | ybaL ← | putative transporter YbaL |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 502,376 | 0 | G | A | 90.0% | 18.9 / ‑5.9 | 10 | S288F (TCC→TTC) | ybaL | putative transporter YbaL |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (6/3); total (7/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTAAATTCAATGCCATTCCCAGTCCCGCCAGGATAAACGCGAACTCACCAATCTGCGCCAGGCTGGCGGCGATGGTTAATGCCGTACGTTGGGAGTGACCAAACAGTCGCACCAGGAAAAATGCGGCTAACGACTTACCAAACAGAATAATCGCCAGCGTCGCCAGCACTGCCAGCGGTTGCTGAATCAGAATTAACGGATCAAACAACATCCCGACGGAGACAAAAAA‑CAGCACCGCAAACGCGTCGCGCAATGGCAGCGTATCGTGGGCGGCACGGTGACTCAGTTCAGACTCGTTCAGTACCATCCCGGCAAAGAACGCACCGAGTGCAAAGGAGACATCAAACAGCTCTACCGCACCAAAGGCAACCCCTAACGCCAGCGCCAGCACCGACAGGGTAAACAGCTCGCGAGAACC > NC_000913/502158‑502575 | gTAAATTCAATGCCATTCCCAGTCCCGCCAGGATAAACGCGAACTCACCAATCTGCGCCAGGCTGGCGGCGATGGTTAATGTCGTACGTTGGGAGTGACCAACCAGTCGCACCAGGAAAAATGCGGCTAACGACTTACCAAACAGAATAATCGCCAGCGTCGCCAGCACTGCCAGCGGTTGCTGCATCAGAATTAACGGATCAAACAACATCCCGACGAAGACAAAAAA‑CAGCACCGCAAACGCGTCgcgc > 1:74040/1‑251 (MQ=255) cccGCAAGGATAAACGCGAACTCACCAATCTGCGCCAGGCTGGCGGCGATGGTTAATGCCGTACGTTGGGAGTGACCAAACAGTCGCACCAGGAAAAATGCGGCTAACGACTTACCAAACAGAATAATCGCCAGCGTCGCCAGCACTGCCAGCGGTTGCTGAATCAGAATTAACGGATCAAACAACCTCCCGACGAAGACAAAAAA‑CAGCACCGCAAACGCGTc > 1:132653/1‑224 (MQ=255) cgAACTCACCAATCTGCGCCAGGCTGGCGGCGATGGTTAATGCCGTACGTTGGGAGTGACCAAACAGTCGCACCAGGAAAAATGCGGCTAACGACTTACCAAACAGAATAATCGCCAGCGTCGCCAGCACTGCCAGCGGTTGCTGAATCAGAATTAACGGATCAAACAACATCCCGACGAAGACAAAAAA‑CAGCACCGc > 1:129983/1‑199 (MQ=255) cgcCAGACTGGCGGCGATGGTTAATGCCGTACGTTGGGAGTGACCAAACAGTCGCACCCGGAACAATGCGACTAACGACTTACCAAACAGAATAATCGCCAGCGTCGACAACACTGCCAGCGGTTGCTCACTCAGACTTCACGGATCCAACAACATCCTGACGAAGACAAAAAAACAGCACCGCAAAc > 1:24668/1‑188 (MQ=255) gcCAGGCTGGCGGCGATGGTTAATGCCGTACGTTGGGAGTGACCAAACAGTCGCACCAGGAAAAATGCGGCTAACGACTTACCAAACAGAATAATCGCCAGCGTCGCCAGCACTGCCAGCGGTTGCTGAATCAGAATTAACGGATCAAACAACATCCCGCCGAAGACAAAAAA‑CAGCACCGCAAACGCGTCGCGCAATGGCAGCGTATCGTGGGCGGCACGGTGACTCAGATCAGACTCGTTCAGTACCAt > 1:130826/1‑251 (MQ=255) gACCAAACAGTCGCACCAGGAAAAATGCGGCTAACGACTTACCAAACAGAATAATCGCCAGCGTCGCCAGCACTGCCAGCGGTTGCTGAATCAGAATTAACGGATCAAACAACATCCCGACGAAGACAAAAAA‑CAGCACCGCAAACGCGTCGCGCAATGGCAGCGTATCGTGGGCGGCACGGTGACTCAGTTCAGACTCGTTCAGTACCATCCCGGCAAAGAACGCACCGAGTGCAAAGGAGACATCAAAc > 1:110731/1‑251 (MQ=255) cctgAAAAATGCGGCGAACGACTTACCAAACAGAATAGTCGCCAGCGTCGCCAGCACTGCCAGCGGTTGCTGAATCAGAATTAACGGATCAAACAACATCCCGGCGAAGACAAAATA‑CAGCACCGCAAACGCGTCGCGCAATGGCAGCGTATCTTGGGCGGCGCGGGGACTCATTTCAGACTCGTTCAGTACCAGCCCGGCAAAGAACGCATCGAGTGCAAAGGAGACATCAAACAGCTCTACCGCACCaa < 1:94714/248‑1 (MQ=255) aaTGCCGCTAACGCCTTACGACACCGACTAATCGCACGCGTCGCCAGCGCTGTTAGCGGTTGCCCCATCAGAATTAAAGGAACAACCACCACCCCCCCGGACAAAAAAAC‑CAAAACCGCAAACACGTAGCGCACTGGCAGCGTACGGAAGGCGGCACGGCGGCGCAGCTCAGACTCGTTCAGAACCATTCCGGCAAAGAACGCACCGCGTGCAAAGGAGACATCAAACAGCTCTACAGCACCAAAGGCAAc > 1:50675/1‑251 (MQ=255) cAGCGGTTGCTGAATCAGAATTAACGGATCAAACAACATCCCGACGAAGACAAAAAA‑CAGCACCGCAAACGCGTCGCGCAATGGCAGCGTATCGTGGGCGGCACGGTGACTCAGTTCAGACTCGTTCAGTACCATCCCGGCAAAGAACGCTCCGAGTGCAAAGGAGTCATCAAACAGCTCTACCGc < 1:133504/186‑1 (MQ=255) cAGAATTAACGGATCAAACAACATCCCGACGAAGACAAAAAA‑CAGCACCGCAAACGCGTCGCGCAATGGCAGCGTATCGTGGGCGGCACGGTGACTCAGTTCAGACTCGTTCAGTACCATCCCGGCAAAGAACTCACCGAGTGCAAAGGAGACATCAAACAGCTCTACCGCACCAAAGGCAACCCCTAACGGCAGCGCCAGCACCGACAGGGTAAACAGCTCGCGAGAAcc < 1:89071/231‑1 (MQ=255) | GTAAATTCAATGCCATTCCCAGTCCCGCCAGGATAAACGCGAACTCACCAATCTGCGCCAGGCTGGCGGCGATGGTTAATGCCGTACGTTGGGAGTGACCAAACAGTCGCACCAGGAAAAATGCGGCTAACGACTTACCAAACAGAATAATCGCCAGCGTCGCCAGCACTGCCAGCGGTTGCTGAATCAGAATTAACGGATCAAACAACATCCCGACGGAGACAAAAAA‑CAGCACCGCAAACGCGTCGCGCAATGGCAGCGTATCGTGGGCGGCACGGTGACTCAGTTCAGACTCGTTCAGTACCATCCCGGCAAAGAACGCACCGAGTGCAAAGGAGACATCAAACAGCTCTACCGCACCAAAGGCAACCCCTAACGCCAGCGCCAGCACCGACAGGGTAAACAGCTCGCGAGAACC > NC_000913/502158‑502575 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |