| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,260,796 | C→T | P205P (CCG→CCA) | fruA ← | fructose‑specific PTS multiphosphoryl transfer protein FruA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,260,796 | 0 | C | T | 85.7% | 10.7 / ‑5.9 | 7 | P205P (CCG→CCA) | fruA | fructose‑specific PTS multiphosphoryl transfer protein FruA |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (3/3); minor base A (1/0); total (4/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCACCATCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCCGGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGACGGTATGCGCCTGCACTCTCTTTCTTACTTTCAGTGGTCGCCGTTTGAGCTTTGCCCGCCGGTTCATACGGCGTTGCTTCAGCAACCGCTTTATCCAGTTCCTGCGCGGTTTTCTTCAGCGCCAGACCGGTAGAGGTACGATACATCGGTTTACCAGCAAATTTCGC > NC_000913/2260564‑2260894 | gCACCATCAGCGCAAAGGCTGACCCACCACCAATCTGCATCAGCGCCGCAGAGAAAGTACCCGCCTCTGTAACCGCTTCGCTACGATACGCACAGGAAAGCGCGCTCCACAGACCCCCTGCAACGACCCTCGGCAGCATGTACGAATCGCCCGTCAGCAAGTGACGGTATGCGCCTGCCATCTCTTTCTTCCTTTCAGTGGTCGCCGATTGCGCTTTGCCCGCCGGTTCATCAGGAGTTGCTTCCGCaccc > 1:119223/1‑248 (MQ=255) gcAGCCAACGTACCCGGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAACGCGCGATACACAGACCCCCTGCAACGACCATCAGCAGCATGCAAGAAACGACCGTCAGCAAGTGACGGTATGCGCCTGCACTCTCTTTATTAATTTAAGTGGTCGCCGTTTGAGCTTTGCCCGCCGGTTCATATGGCGTTGCTTCAGCAACCGCTTTATCCAGTTCCTGCGCGGTTTTCTTCAGCGCCAGACCGGt > 1:87584/1‑248 (MQ=255) cggCCAACGTACCCGGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAACCGCCCGTCAGCAAGTGACGGTATGCGCCTGCACGCTCTTGCTTACTTTCAGTGGTCGCCGTTTGAGCTTTGCCCGCCGGTTCAGATGGCGTTGCTTCAGCAACCGCTTTATCCAGTTCCTGCGCGGTTTTCTTCAGCGCCAGACCGGTagag < 1:160239/249‑1 (MQ=255) cgcgtCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCCTGTAAGACACGCCCGTCAGCAAGTGACGGTATGCGCCTGCACTCTCTTTCTTACTTTCCGTGGTCGCTGTTTGAGCTTTGCCCGCCGGTTCATATGTCGTTGCTTCAGCAACCGCTTTATCCAGTTCCTGCGCGGTTTTCTTCAGCGCCCGACCGGTAGAGGTACGATACATCGGTTTACCAGCa > 1:120728/5‑250 (MQ=255) aTACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCACCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGACGGTATGCGCCTGCACTCTCTTTCTTACTTTCAGTGGTCGCCGTTTGAGCTTTGCCCGCCGGTTCATATGGCGTTGCTTCAGCAACCGCTTTATCCAGTTCCTGCGCGGTTTTCTTCAGCGCCAGACCGGTAGAGGTACGATACATCGGTTTACCAGCAAATTTCgn < 1:30356/251‑2 (MQ=255) gcaTGTAAGAAACGCCCGTCAGCAAGTGACGGTATGCGCCTGCACTCTCTTTCTTACTTTCAGTGGTCGCCGTTTGAGCTTTGCCCGCCGGTTCATATGGCGTTGCTTCAGCAACCGCTTTATCCAGTTCCTGCGCGGTTTTCTTCAGCGcc > 1:123473/1‑152 (MQ=255) tAAGAAACGCCCGTCAGCAAGTGACGGTATGCGCCTGCACTCTCTTTCTTACTTTCAGTGGTCGCCGTTTGAGCTTTGCCCGCCGGTTCATATGGCGTTGCTTCAGCAACCGCTTTATCCAGTTCCTGCGCGGTTTTCTTCAGCGCCAGACCGGTAGAGGTACGATACATCGGTTTACCAGCAAAtttn < 1:41078/189‑2 (MQ=255) | GCACCATCAGCGCAAAGGCTGAACCACCACCAATCTGCATCAGCGCCGCAGCCAACGTACCCGGCTCTTTAAACGCTTCGATACCAAAAGCAAAAGAAAGCGCGATACACAGACCACCTGCAACGACCATCGGCAGCATGTAAGAAACGCCCGTCAGCAAGTGACGGTATGCGCCTGCACTCTCTTTCTTACTTTCAGTGGTCGCCGTTTGAGCTTTGCCCGCCGGTTCATACGGCGTTGCTTCAGCAACCGCTTTATCCAGTTCCTGCGCGGTTTTCTTCAGCGCCAGACCGGTAGAGGTACGATACATCGGTTTACCAGCAAATTTCGC > NC_000913/2260564‑2260894 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |