New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979271 =	0 (0.000)	5 (0.610)	4/334	0.4	100%	intergenic (‑56/‑482)	insA5/uspC	IS1 family protein InsA/universal stress protein C
	?	NC_000913	= 2102947	NA (NA)					pseudogene (443/446 nt)	wbbL	interrupted rhamnosyltransferase WbbL

CAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATA  >  NC_000913/1979023‑1979409                                                                                                                                                                                                                                                         |                                                                                                                                           gtttccagcggataaggtcgccggccattaccagccttggggtaaaacggcacgatgacttccaccatgttttgccatggccgaatctgttacatgcgggacaagaaaatctattttctggtctgacggcgcttactgctgaattcactgtcggagaaggcaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCAt                                                                                                                                          <  1:109769‑M1/3‑1 (MQ=255)         cggataaggtcgccggccattaccagccttggggtaaaacggctcgatgacttacaccatgttttgcaatggcagactctgctccatgcggaacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaacactgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGtat                                                                                                                                  <  1:139101‑M1/11‑1 (MQ=255)                                                                                 cagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgcattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggctttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATg                                                           <  1:169004‑M1/82‑1 (MQ=255)                                                                                 cagaatctgctccatgcgggacaagaaaatctcttttctgcactgacggcgcttaccgctgcattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttatctggctccagatgacaaacatgatctcatatccgggctttgttcgcaccttccttaaCATAAATGTATAAGTAATACTTTTGTTTTGGGTGTATTTCACTCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATg                                                           <  1:169001‑M1/82‑1 (MQ=255)                                                                                                                                          gctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagctgacaaacatgatctcatatccgggacttgttcgcaccttacttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTAAAAATAACTCACCGTAaata  <  1:79410‑M1/139‑1 (MQ=255)                                                                                                                                                                                                                                                         |                                                                                                                                           CAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATA  >  NC_000913/1979023‑1979409

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.