| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 178,334 | C→T | T43T (ACG→ACA) | btuF ← | vitamin B12 ABC transporter periplasmic binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 178,334 | 0 | C | T | 90.0% | 21.2 / ‑5.7 | 10 | T43T (ACG→ACA) | btuF | vitamin B12 ABC transporter periplasmic binding protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (4/5); minor base G (1/0); total (5/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGGGGGCCAGTTGACGTAACGCATTGGCAATTTGTTCAATGCTTGTCGCATCGACCCACATCACTTTTATTCCCAGCGAAGCCAGCTGGTCAACCTGCCGCTCGGCATTACCTCCACGCCAGGCAATCACCAGATCGGGTTTCAGCGCGACAATGCGTTCCAGATTCATCCCCTGCCAGGTGGAAACCTGCTCAATCTTTTGCGCTTGTGGAGGATAGTCGGAATAGCTGCTGACCCCAACCGGCGTGATCCCGGCGGCAAAGGCAAGTTCAGTGTTGGCGGGAGAAAGCGTGATGACGCGCGGCGCGGCGTTGAGCCACAGTGGCGCAAGAAAAGACAGGGCGACCAGCGCCCTGAACAGTGACTTAGCCATGTGCAAGTTTCTGCACCAGTGACTCAACCATCAGGCTGGACTGTTTAGCGGCAACAGCCAGGAACTCATCGAAGCTAAGATGAGACTG > NC_000913/178090‑178550 | aGGGGGCCAGTTGACGTAACGCATTGGCAATTTGTTCAATGCTTGTCGCATCGACCCACATCACTTTTATTCCCAGCGAAGCCAGCTGGTCAACCTGCCGCTCGGCATTACCTCCACGCCAGGCAAGCACCAGATCGGGTTTCAGCGCGACAATGCGTTCCAGATTCATCCCCTGCCAGGTGGAAACCTGCGCAATCTGTTGCGCTTGTGGAGGATAGTCGGAATAGTTGCTGACCCCAACCGGTGTGATc < 1:94180/251‑1 (MQ=255) cGACCCACATCACTTTTATTCCCAGCGAAGCCAGCTGGACAACCTGCCGCTCGGCATTACCTCCACGCCAGGCAATCACCAGAGCGGGTGTCAGCGCGACAAGGCTGTCCAGAGTCATCCCCGGCCAGGTGGAAACCTGCTCAATCTTTTGCGCATGTGGAGGATAGTCGGAATAGTTGCTGACCCCAACCGGTGTGATCCCGGCGGCAAAGGCAAGTTCAGTGTTGGCTGGAGAAAGCGTGATGAcgcgc < 1:110686/251‑1 (MQ=255) ngtnngaatNCCAGCGAGGCCTGCGGGTCAACCGNCCGCTCGGCATTACCTCCGCGCCAGGCAATCNCNAGATCGGGTTTCAGCGCGACAATGCGTTCCAGAGTCATCCCCTGCCAGNTGGAAACCTGNTCANNCTGTNGNGNTTGTGGATGATAGTCGGAATAGTTGCTGANCCCAACCGGTGTGATCCCGGCGGNNAANNNAANNTCAgc < 2:127601/204‑2 (MQ=255) ccAGCGAAGCCAGCTGGTCAACCTGCCGCTCGGCATTACCTCCACGCCAGGAAATCACCAGATCGGGTTTCAGCGCGCCAATGCGTTCCAGATTCATCCCCTGCCAGGTGGAAACCTGCTCAATCTTTTGCGCTTGTGGAGGATAGTCGGAATAGTTGCTGACCCCAACCGGTGTGATCCCGGCGGCAAAGGCACGTTCAgc > 1:127601/1‑201 (MQ=255) gtcAATCACCAGATCGGGTTTCAGCGCGACAATGCGTTCCAGATTCATCCCCTGCCAGGTGGAAACCTGCTCAATCTTTTGCGCTTGTGGAGGATAGTCGGAATAGTTGCTGACCCCAACCGGTGTGATCCCGGCGGCAAAGGCAAGTTCAGTGTTGGCGGGAGAAAGCGTGATGACGCGCGGCGCGGCGTTGAGCCACAGTGGCGCAAGAAAAGACAGGGCGACCAGCGCCCTGAACAGTGACTTAGcc > 1:161724/3‑250 (MQ=255) aCCAGATCGGGTTTCAGCGCGACAATGCGTTCCAGATTCATCCCCTGCCAGGTGGAAACCTGCTCAATCTTTTGCGCTTGTGGAGGATAGTCGGAATAGTTGCTGACCCCAACCGGTGTGATCCCGGCGGCAAAGGCAAGTTCAGTGTTGGCGGGAGAAAGCGTGATGACGCGCGGCGCGGCGTTGAGCCACAGTGGCGCAAGAAAAGACAGGGCGACCAGCGCCCTGAACAGTGACTTAGCCATGTGCa > 1:60696/1‑250 (MQ=255) ggaggaTAGGCGGAATAGTTGCTGACCCCAACCGGTGTGATCCCGGCGGCAAAGGCAAGTTCAGTGTTGGCGGGAGAAAGCGTGATGACGCGCGGCGCGGCGTTGAGCCACAGTGGCGCAAGAAAAGACAGTGCGACCAGCGCCCTGAACAGTGACTTAGCCATGTGCAAGTTTCTGCACCAGTGACTCAACCATCAGGCTGGACTGTTTAGCGGCATCAGCCAGGAACTCATCGAAGCTAAGATGAGACt < 1:151413/251‑1 (MQ=255) gaggaTAGTCGGAATAGTTGCTGACCCCAACCGGTGTGATCCCGGCGGCAAAGGCAAGTTCAGTGTTGGCGGGAGAAAGCGTGATGACGCGCGGCGCGGCGTTGAGCCACAGTGGCGCAAGAAAAGACAGGGCGACCAGCGCCCTGAACAGTGACTTAGCCATGTGCAAGTTTCTGCACCAGTGACTCAACCATCAGGCTGGACTGTTTAGCGGCAACAGCCAGGAACTCATCGAAGCTAAGATGAGACTg > 1:118871/1‑251 (MQ=255) gaggaTAGTCGGAATAGTTGCTGACCCCAACCGGGGAGATCCCGGCGGCAAAGGCAAGTTCAATGTTGGCGGGAGAAAGAGTGATGACGCGCGGCGCGGCTTTGAGCCACAGTGGCGCACGAAAAGACAGGACGACCAGCGCCCTGAACAGTGACTTAACCATGTGCAAGTTTCTGCACCAGTGACTCTACCATCAGGCTGGACTGATAAGCGGCAACAGCCAGGACCTCATCGACGATAAGATGAGAcgg > 1:118866/1‑249 (MQ=255) ccccAACCGGTGTGATCCCGGCGGCAAAGGCAAGTTCATTGTTGGCGGGAGAAAGCGTGATGACGCGCGGCGCGTGGTTGAGCCACAGTGGCGCAAGAAAAGACAGGGCGACCAGCGCCCTGAACATTGACTTAGCCATGTGCAAGTGGCTGCACCAGTGACTCAACCATCAGGCTGGACTGTTTAGc < 1:93602/188‑1 (MQ=255) | AGGGGGCCAGTTGACGTAACGCATTGGCAATTTGTTCAATGCTTGTCGCATCGACCCACATCACTTTTATTCCCAGCGAAGCCAGCTGGTCAACCTGCCGCTCGGCATTACCTCCACGCCAGGCAATCACCAGATCGGGTTTCAGCGCGACAATGCGTTCCAGATTCATCCCCTGCCAGGTGGAAACCTGCTCAATCTTTTGCGCTTGTGGAGGATAGTCGGAATAGCTGCTGACCCCAACCGGCGTGATCCCGGCGGCAAAGGCAAGTTCAGTGTTGGCGGGAGAAAGCGTGATGACGCGCGGCGCGGCGTTGAGCCACAGTGGCGCAAGAAAAGACAGGGCGACCAGCGCCCTGAACAGTGACTTAGCCATGTGCAAGTTTCTGCACCAGTGACTCAACCATCAGGCTGGACTGTTTAGCGGCAACAGCCAGGAACTCATCGAAGCTAAGATGAGACTG > NC_000913/178090‑178550 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |