| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,657,359 | G→A | F33F (TTC→TTT) | ynfC ← | PF06788 family lipoprotein YnfC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,657,359 | 0 | G | A | 93.8% | 43.8 / NA | 16 | F33F (TTC→TTT) | ynfC | PF06788 family lipoprotein YnfC |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (5/10); minor base C (1/0); total (6/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCCTGTAAACGTACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGTAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCTGAGTGAAATCTTTTACCGGACCACGCAGCGGATCAAAATCGAATTCATTAGAGAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCACAACAGTCACCAGAGAGTAGAGATGATTCTCAATCATAGTAGCAAATACAGTACTTTACACGTTAAATGCTATGCTTAAAGAAGTTATCTTCGCGTAAGGAGCTTATGATGAAACTCTCAACCTGCTGTGCCGCGCTTCTGC > NC_000913/1657126‑1657598 | cccTGTAAACGTACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGTAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCTGAGTGAAATCTTTTACCGGACCACGCAGCGGATCAAAATCGAATTCATTAGAAAAACTGGCCATCTCAgg < 1:3496/251‑1 (MQ=255) gTAAACGTACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGTAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCAGCCATTAATGTCTGAGTGAAATCTTTGACCGGACCACGCAGCGGATCAAAATCGAATTCATTAGAAAAACTGGCCATCTCAgggg < 1:120159/249‑1 (MQ=255) aagtGGCGTCCAGTACCAGAGCGACCACGGTATTATTGTCCAGATCCAGTAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTGGCTCATCCATTAATGTCTGAGTGAAATCTGTTACCGGGCCACGCAGCGGATCAAAAGCGAATTCATTAGAAAAACTGGCCAGCTCAGGGGTAAATGAAAGTGTTTCCTCTGTGCGGTCACATCCTGTGAGGAat < 1:162199/248‑1 (MQ=255) gCGACCACGGTATTATTTTCCAGATCCAGTAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCTGAGTGAAATCTTTTACCGGACCACGCAGCAGATCAAAAGCGAATTCATTAGAAAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTCCCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGgtag < 1:154904/251‑1 (MQ=255) aCCACGGTATTATTTTCCAGATCCAGTAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCTGAGTGAAATCTTTTACCGGACCACGCAGCGGATCAAAATCGAATTCATTAGAAAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGgtagta > 1:5755/1‑250 (MQ=255) aaaaCAGCCTTCTTCCCACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCTGAGTGAAATCTTTAACCGGACCACGGAGCGGATCAAAATCGAATTCATTAGAACAACTGGACATCTCAGGGGAAAATGAAAGAGTTACCTCTGTGCGGTCACCTCCTGTGAGGAATATCGCGCGTAAGCATGGTAGTAATTTGTATTTCACAACAGTCACCAGAGAGTAACGATGATtct > 1:171189/1‑251 (MQ=255) ccTTCGTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCTGAGTGAAATCTTTTACCGGACCACGCAGCGGATCAAAATCGAATTCATTAGAAAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCACAACAGTCACCAGAGAGTAGAGATGATtc < 1:338/243‑1 (MQ=255) aCAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCTGAGTGAAATCTTTTACCGGACCACGCAGCGGCTCAAAATCGAATTCATTAGAAAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCACAACAGTCACCAGAGAGTAGAGATGATTCTCAATCATAGTAGCAAAt > 1:154608/1‑251 (MQ=255) gTCTGAGTGAAATCTTTTACCGGACCACGCAGCGGATCAAAATCGAATTCATTCGACAAACTGGCCATCTCAGGGGAAAATGCAAGAGTTACCTCTGTGCGGTCACATCCTGAGAGGAATATCGCGAGTACGCATGGTAGTAATTTGTATTTCACAACAGTCACCAGAGCGTAGAGATGATTCTCAATCATAGTAGCAAATACAGTACTTTACACGTTAAatgctatg > 1:73405/1‑228 (MQ=255) gAAATCTTTTACCGGACCACGCAGCGGATCAAAATCGAATTCATTAGAAAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCACAACAGTCACCAGAGAGTAGAGATGATTCTCAATCATAGTAGCAAATACAGTACTTTACACGTTAAATGCTATGCTTAAAGAAGTTATCTTCGCGTAAGGAGcn < 1:17920/250‑2 (MQ=255) gCAGCNNATNNNAANNGAATTCATTAGAAAAACTGGCCANCTCAGGGGTAAATGAAAGTGTTACCTCTGNGNGNTCACNNCCTNTGAGGAATATNGCGAGTAAGCATGGTAGTAATTTGTATTTc > 2:125010/1‑125 (MQ=255) gCAGCGGATCAAAATCGAATTCATTAGAAAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCGCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTc < 1:125010/125‑1 (MQ=255) ggATCAAAATCGAATTCATTAGAAAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCACAACAGTCACCanag > 2:100407/1‑136 (MQ=255) ggATCAAAATCGAATTCATTAGAAAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCACAACAGTCACCAGAGAGTAGAGATGATTCTCTATCATAGTAGCAAATACAGTACTTTACACGTTAAATGCTATGCTTAAAGAAGTTATCTTCGCGTAAGGAGCTTATGATGAAACTCTCaan < 1:100407/243‑2 (MQ=255) ggATCAAAATCGAATTCATTAGAAAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCACAACAGTCACCAGAGAGTAGAGATGATTCTCAATCATAGTAGCAAATACAGTACTTTACACGTTAAATGCTATGCTTAAAGAAGTTATCTTCGCGTAAGGAGCTTATGATGAAACTCTCAACCTGCtgtg < 1:8814/251‑1 (MQ=255) aaTTCATTAGAAAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCACAACAGTCACCAGAGAGTAGAGATGATTCTCAATCATAGTAGCAAATACAGTACTTTACACGTTAAATGCTATGCTTAAAGAAGTTATCTTCGCGTAAGGAGCTTATGATGAAACTCTCAACCTGCTGTGCCGCGCTTCTGc < 1:113998/251‑1 (MQ=255) | CCCTGTAAACGTACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGTAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCTGAGTGAAATCTTTTACCGGACCACGCAGCGGATCAAAATCGAATTCATTAGAGAAACTGGCCATCTCAGGGGTAAATGAAAGTGTTACCTCTGTGCGGTCACATCCTGTGAGGAATATCGCGAGTAAGCATGGTAGTAATTTGTATTTCACAACAGTCACCAGAGAGTAGAGATGATTCTCAATCATAGTAGCAAATACAGTACTTTACACGTTAAATGCTATGCTTAAAGAAGTTATCTTCGCGTAAGGAGCTTATGATGAAACTCTCAACCTGCTGTGCCGCGCTTCTGC > NC_000913/1657126‑1657598 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |