| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 281,174 | C→T | L270L (CTG→CTA) | yagA ← | integrase core domain‑containing protein YagA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 281,174 | 0 | C | T | 90.9% | 22.7 / ‑4.3 | 11 | L270L (CTG→CTA) | yagA | integrase core domain‑containing protein YagA |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (4/6); minor base G (0/1); total (4/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.48e-01 | |||||||||||
TCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCTGCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCCCTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCCGCGCTGACGGCTGATACCGCGAGCCCGGTACCGCCATATCCAGCGCCTCGTGCGGGCGTTCAAGGTTATAGACCGTCCGCCAGTGGTCGAAGGCGCGCTGCAGTTCACCGCTGTCTGCGAACCATTTTCCCTGCAGCACTTCCGCCTTCAGGCTGCGGTGAAAACGCTCCAGCTTCCCCTGCGTCTGCGGATGATAAGGCCGGGAGTGCCCCACCCGGATACCCAGGCGCATCAGCCACAGCTCCAGCGCCGTCCAGGTGCCGGTGGTGTCGCCCCACGGTGAGCCGTTATCCATGGTCATCCGGTCCGGCAGGCCGTAACGCTCAAACACGC > NC_000913/280933‑281406 | tCAGCCCGCCCCGTTCCCCCCTGAACCCCTGCCCGGCGCTCAGACTTCCCCCTTCCCCGCTCAGCTTTCCGCTGATATCCCCTTCCCTGACCATCCCCCCTTCACCGTATTCCGGGGGCGTTGTGTGGCGGCTGTACGGCCGCGCTGACGGCTGATACCGCGAGCGCGGTACCGCCATATCCAGCGCCTCGTGCGGGCGTTCAAGGTTATAGACCGTCCGCCAGTGGTCGAAGGCGCGCTGTAGTTCAc < 1:81202/249‑1 (MQ=255) ccccGTTCTCCCCTGAACGCCTTGCCTGCGCTCAGACTTCCCCCTTTCCCGCTCAGCTTTCCGCTGATATCCCCTTTCCTGCCCATCCCCCCTTCATCGTATTCCGGGGGCTTTGTGTTCCCGCTGTCCTGCCGCGCTGACGGCTGATACCGCGAGCCCGGTACCGCCATATCCAGCGCCTCGTGCGGGCGTTCAAGGTTATAGACCGTCCGCCAGTGGTCGAAGGCGCGCTGGAGTTCACCGCTGTCTGc < 1:45544/250‑1 (MQ=255) cctgacccccTTGCCTGCGCTCAGACTTCCCCCTTCCCCGCTCAGCTTTCCGCTGATATCCCCTTTCCTTCCCATCCCCCCTTCATCGTATTCGGGGGGCGTTGTGTTGCCGCTGTCCTGCCGCGCTGACGGCTGATCCCGCGGGCCCGGTACCGCCATATCCAGCGCCTCGTGCGGGCGTTCAAGGTTATAGACCGTCCGCCAGTGGTCGAAGGCGCGCTGTAGTTCACCGCTGTCTGCGAACCATTTTc < 1:9452/243‑1 (MQ=255) ccATCGTTTTCGGGGGGGTTTGTGTTGCCGCTGTACGGCCGGGCGGCCGGCTGATACCGCGAGCCCGGTACCGCCATATCCAGCGCCTCGTGCGGGCGTTCAAGGTTATAGACCGTCCGCCAGTGGTCGAAGGCGCGCTGTAGTTCACCGCTGTCTGCGAACCATTTTCCCTGCAGCACTTCCGCCTTCAGGCTGCGGTGAAAACGCTCCAGCTTCCCCTTCGTCTGCGGATGATAAGGCCGGGAGTGc < 1:53320/248‑1 (MQ=255) gTATTCCGGGGGCGTTGTGTTGCCGCTGTACTTCCGCGCTGACGGCTGATACCGCGAGCCCGGTACCGCCATATCCAGCGCCTCGTGCGGGCGTTCAAGGTTATAGACCGTCCGCCAGTGGTCGAAGGCGCGCTGTAGTTCACCGCTGTCTGCGAACCATTTTCCCTGCAGCACTTCCGCCTTCAGGCTGCGGTGAAAACGCTCCAGCTTCCCCTGCGTCTGCGGATGATAAGGCCGGGAGTGCCCCAccc > 1:56512/1‑251 (MQ=255) ccGCTGTACTGCCGCGCTGACGGCTGATACCGCGAGCCCGGTACCGCCATATCCAGCGCCTCGTGCGGGCGTTCAAGGTTATAGCCCGTCCGCCAGTGGTCGAAGGCGCGCTGTAGTCCACCGCTGTCTGCGAACCATTTTCCCTGCAGCACTTCCGCCTTCAGGCTGCGGTGAAAACGCTCCAGCTTCCCCTGCGTCTGCGGATGATAAGGCCGGGCGTGCCCCACCCGGATACCCAGGCGCATCAGcc > 1:106348/1‑250 (MQ=255) atCCAGCGCCTCGTGCGGGCGTTCAAGGTGATAGACCGTCCGCCAGTGGTCGAAGGCGCGCTGTAGTTCACCGCTGTCTGCGAACCATTTTCCCTGCAGCACTTCCGCCTTCAGGCTGCGGTGAAAACGCTCCAGCTTCCCCTGCGTCTGCGGATTATAAGGCCGGGAGTGCCCCACCCGGATACCCAGGCTCATCAGCCACAGCTCCAGCGCCGTCCAGGTGCCGGTGGTGTCGCCCCACGGTGAGCCGt < 1:111989/251‑1 (MQ=255) ggCGTTCAAGGTTATAGACCGTCCGCCAGTGGTCGAAGGCGCGCTGTAGTTCACCGCTGTCTGCGAACCATTTTCCCTGCAGCACTTCCGCCTTCAGGCTGCGGTGAAAACGCTCCAGCTTCCCCTGCGTCTGNGGANNNNNAgnnnnnnnnnn > 2:101759/1‑144 (MQ=255) gTTCAAGGTTATAGACCGTCCGCCAGTGGTCGAAGGCGCGCTGTAGTTCACCGCTGTCTGCGAACCATTTTCCCTGCAGCACTTCCGCCTTCAGGCTGCGGTGAAAACGCTCCAGCTTCCCCTGCGTCTGCGGATGATAAGGCCGGGAGTg < 1:81449/151‑1 (MQ=255) aGTGGTCGACGGCGCGATGTAGTTCACCGCTGCCTGCGAACAATTTTCCCTGCAGCACTTCCGCCTTCAGGCTGCGGTGAACACGCTCCAGCTTCCCCTGCGTCTGCGGATGCTAAGGCCGGGAGTGCCCCACCCGGATACCCAGGCGCATCAGCCACAGCTCCAGCGCCGTCCAGGTGCCGGTGGTGTCGCCCCACGGTGAGCCGTTATCCATGGTCATCCGGTCCGGCAGGCCGTAACGATCAAACACg > 1:139815/1‑251 (MQ=255) gTGGTCGAAGGCGCGCTGTAGTTCACCGCTGTCTGCGAACCATTTTCCCTGCAGCACTTCCGCCTTCAGGCTGCGGTGAAAACGCTCCAGCTTCCCCTGCGTCTGCGGATGATAAGGCCGGGAGTGCCCCACCCGGATACCCAGGCGCATCAGCCACAGCTCCAGCGCCGTCCAGGTGCCGGTGGTGTCGCCCCACGGTGAGCCGTTATCCATGGTCATCCGGTCCGGTAGGCCGTAACGCTCAAACACgn < 1:101759/251‑2 (MQ=255) | TCAGCCCGACCCGTTCTCCCCTGAACGCCTTGCCTGCGCTCAGACTTACCCCTTTCACGCTCAGCTTTCCGCTGATATCCACTTTCCTGACCATCACCCCTTCATCGTATTCCGGGGGCGTTGTGTTGCCGCTGTACTGCCGCGCTGACGGCTGATACCGCGAGCCCGGTACCGCCATATCCAGCGCCTCGTGCGGGCGTTCAAGGTTATAGACCGTCCGCCAGTGGTCGAAGGCGCGCTGCAGTTCACCGCTGTCTGCGAACCATTTTCCCTGCAGCACTTCCGCCTTCAGGCTGCGGTGAAAACGCTCCAGCTTCCCCTGCGTCTGCGGATGATAAGGCCGGGAGTGCCCCACCCGGATACCCAGGCGCATCAGCCACAGCTCCAGCGCCGTCCAGGTGCCGGTGGTGTCGCCCCACGGTGAGCCGTTATCCATGGTCATCCGGTCCGGCAGGCCGTAACGCTCAAACACGC > NC_000913/280933‑281406 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |