| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 204,796 | C→T | P102S (CCG→TCG) | rnhB → | RNase HII |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 204,796 | 0 | C | T | 91.7% | 22.6 / ‑3.8 | 12 | P102S (CCG→TCG) | rnhB | RNase HII |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (8/3); total (8/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.85e-01 | |||||||||||
GCGCGGTCGTCACCGCTGCGGTGATCCTTGACCCGGCGCGCCCGATTGCCGGGCTGAATGATTCCAAAAAGCTGAGCGAAAAACGCCGTCTGGCGCTCTATGAAGAGATCAAAGAGAAAGCGTTGAGCTGGAGTCTGGGCCGCGCGGAACCCCACGAAATCGACGAGCTGAACATTCTTCATGCGACCATGCTGGCGATGCAGCGTGCCGTCGCTGGGCTGCATATTGCGCCGGAATATGTGTTGATTGATGGTAACCGCTGCCCGAAATTACCGATGCCTGCGATGGCTGTGGTGAAAGGCGATAGCCGCGTACCGGAAATCAGTGCCGCGTCTATCCTGGCGAAAGTGACGCGTGACGCCGAAATGGCGGCGCTGGATATTGTTTTCCCGCAATATGGTTTTGCCCAACACAAAGGGTACCCAACCGCTTTTCATCTGGAAAAACTGGCTGAACACGGCGCGAC > NC_000913/204566‑205031 | gcgcGGTCGTCACCGCTGCGGTGATCCTTGACCCGGCGCGCCCGATTGCCGGGCTGAATGATTCCAAAAAGCTGAGCGAACAACGCCGTCTGGCGATCTATGAAGAGATCAAAGAGAAAGCGTTGAGATGGAGTCTGGGCCGCGCGGAGCCCCACGAAATCGACGAGCTGAACATTCTTCATGCGACCATGCTGGCGATGCAGCGTGCCGTCGCTGGGATGCATATTGCGTCGGAATATGTGTtgcttgat > 1:120524/1‑251 (MQ=255) ncGGTGATCCTTGACCCGGCGCGCCCGATTGCCGGGCTGAATGATTCCACAAAGCTGAGCGAAAAACGCCGTCTGGCGCTCTATGACGAGATCAAAGAGAAAGCGTTGAGCTGGAGTCTGGGCCGCGCGGACCCCCACGAAATCGACGAGCTGAACATTCTTCCTGCGACCATGCTGGCGATGCAGCGTGCCGTCGCTGGGCTGCATATTGCGTCGGAATATGTGTTGATTGATGGTAACCGCTGCCCGa > 1:28963/2‑250 (MQ=255) cGAAAAACGCCGTCTGGCGCTCTATGAAGAGATCAAAGAGAAAGCGTTGAGCTGGAGTCTGGGCCGCGCGGAACCCCACGAAATCGAAGAGCTGAACATTCTTCATGCGACCATGCTGGCGATGCAGCGTGCCGTCGCTGGGCTGCATATTGCGTCGGAATATGTGTTGATTGATGGTAACCGCTGCCCGAAATTACCGATGCCTGCGATGGCTGTGGTGAAAGGCGATAGCCGCGTACCGGAAATCAGTg > 1:49571/1‑251 (MQ=255) aaCGCCGTCTGGCGCTCTATGAAGAGATCAAAGAGAAAGCGTTGAGCTGGAGTCTGGGCCGCGCGGAAACCCACGAAATCGACGAGCTGAACATTCTTCATGCGACCATGCTGGCGATGCAGCGTGCCGTCGCTGGGCTGCATCTTGCGTCGGAATATGTGtt > 1:173651/1‑163 (MQ=255) ggCCGCGCGGAACCCCACGAAATCGACGAGCTGAACATTCTTCAGGCGACCATGCTGGCGATGCAGCGTGCCGTCGCTGGGCTGCATATTGCGTCGGAATATGTGTTGATTGATGGTAACCGCTGCCCGAAATTACCGATGCCTGCGATGGCTGTGGTGAAAGGCGATAGCCGCGTACCGGAAATCAGTGCCGCGTCTATcn < 1:33817/202‑2 (MQ=255) ccccACGAAATCGACGAGCTGAACATTCTTCATGCGACCATGCTGGCGATGCAGCGTGCCGTCGCTGGGCTGCATATTGCGTCGGAATATGTGTTGATTGATGGTAACCGCTGCCCGAAATTACCGATGCCTGCGATGGCTGTGGTGAAAGGCGATAGCCGCGTACCGGa > 1:81993/1‑170 (MQ=255) ccACGAAATCGACGAGCTGAACATTCTTCATGCGACCATGCTGGCGATGCAGCGTGCCGTCGCTGGGCTGCATATTGCGTCGGAATATGTGTTGATTGATGGTAACCGCTGCCCGAAATTACCGATGCCTGCGATGGCTGTGGTGAAAGGCGATAGCcg > 1:71746/1‑159 (MQ=255) aCGAANNCGNNNAGNNGAACATTCTTCATGCGACCATGCNGGCGATGCAGCGTGCCGTCGCTGGGCTGCNTNTNGCGTNNGAANATGTGTTGATNGATGGTAACCGCTGCCCGAAATTACCGATGCCTGCGATGGCTGTGGTGNANGGCGATAGCCGCGTACCGGAAATCAGTGCCGNGTCTATCCTGGCGAAAGAGACGCGNGACGNNg > 2:123043/1‑210 (MQ=255) gACCATGCTGGCGATGCAGCGTGCCGTCGCTGGGCTGCATATTGCGTCGGAATATGTGTTGATTGATGGTAACCGCTGCCCGAAATTACCGATGCCTGCGATTGCTGTGGTGAAAGGCGATAGCCGCGTACCGGAAATCAGTGCCGCGTCTATCCTGGCGAAAGTGACGCGTGACGCCGAAATGGCGGCGCTGGATATTGTTGTCCCGCAATATGGTTTTGCCCAACACAAAGGGTACCCAACCGCttttn < 1:20210/251‑2 (MQ=255) aCCATGCGGGCGATGCAGCGTGCCGTCGCTGGGCTGCATATTGCGCCGGAATATGTGTTGATTGATGGTAACCGCTGCCCGAAATGACCGATGCCTGCGAGGGCTGTGGTGAAAGGCGATAGCCGCGTACCGGAAATCAGGGCCGCGTCTATCCTGGCGAAAGTTACGCGTGACGCCGAAATGGCGGCGCTGGAAATTGTTTTCCCGCAATAGGGTTTTGCCCAACACAAAGGGTACCCAACCGCTTTTCa < 1:156025/251‑1 (MQ=255) cAGCGTGCCGTCGCTGGGCTGCATATTGCGTCGGAATATGTGTTGATTGATGGTAACCGCTGCCCGAAATTACCGATGCCTGCGATGGCTGTGGTGAAAGGCGATAGCCGCGTACCGGAAATCAGTGCCGCGTCTATCCTGGCGAAAGAGACGCGTGACGCCGAAATGGCGGCGCTGGATATTGTTTTCCCGCAATATGGTTTTGCCCAACACAAAGGGTACCCAACCGCTTTTCATCTGGAAAAACTGGc < 1:123043/251‑1 (MQ=255) gggCTGCATATTGCGTCGGAATATGTGTTGATTGATGGTAACCGCTGCACGAAATTACCGATGCCTGCGATGGCTGTGGTGAAAGGCGATAGACGCGTACCGGAAATCAGTGCCGCGTCTATCCTGGCGAACGTGACGCGTGACGCCGACATGGCGGAGCTGGATATTGTTTTCCCGCAATATGGTTTTGCCCACCACAAAGGGTACCCAACCGCTTTTCATCTGGAAACAATGGCTGAACACGACGCGAc > 1:113700/1‑251 (MQ=255) | GCGCGGTCGTCACCGCTGCGGTGATCCTTGACCCGGCGCGCCCGATTGCCGGGCTGAATGATTCCAAAAAGCTGAGCGAAAAACGCCGTCTGGCGCTCTATGAAGAGATCAAAGAGAAAGCGTTGAGCTGGAGTCTGGGCCGCGCGGAACCCCACGAAATCGACGAGCTGAACATTCTTCATGCGACCATGCTGGCGATGCAGCGTGCCGTCGCTGGGCTGCATATTGCGCCGGAATATGTGTTGATTGATGGTAACCGCTGCCCGAAATTACCGATGCCTGCGATGGCTGTGGTGAAAGGCGATAGCCGCGTACCGGAAATCAGTGCCGCGTCTATCCTGGCGAAAGTGACGCGTGACGCCGAAATGGCGGCGCTGGATATTGTTTTCCCGCAATATGGTTTTGCCCAACACAAAGGGTACCCAACCGCTTTTCATCTGGAAAAACTGGCTGAACACGGCGCGAC > NC_000913/204566‑205031 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |