mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 3,645 | G→A | W282* (TGG→TAG) | thrB → | homoserine kinase |
| RA | 71,170 | T→C | S262P (TCG→CCG) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 81,102 | G→A | S286L (TCG→TTG) | leuB ← | 3‑isopropylmalate dehydrogenase |
| RA | 154,182 | C→T | L415L (CTG→CTA) | htrE ← | putative fimbrial usher protein HtrE |
| RA | 156,068 | A→G | V45A (GTA→GCA) | yadV ← | putative fimbrial chaperone YadV |
| MC JC | 255,892 | Δ18,063 bp | IS5‑mediated | gpt–[ykfC] | 26 genes gpt, frsA, crl, insB9, insA9, crl, phoE, proB, proA, thrW, ykfI, yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI1, insN, eyeA, [ykfC] |
| RA | 284,535 | T→G | A445A (GCT→GCG) | yagF → | D‑xylonate dehydratase |
| RA | 292,019 | C→T | L174L (CTA→TTA) | yagJ → | protein YagJ |
| RA | 298,885 | G→A | P684S (CCG→TCG) | paoC ← | aldehyde dehydrogenase: molybdenum cofactor‑binding subunit |
| JC JC | 305,664 | IS2 (–) +5 bp | coding (1150‑1154/1644 nt) | ecpD ← | fimbrial adhesin EcpD |
| RA | 309,381 | C→T | D216N (GAT→AAT) | ecpB ← | putative fimbrial chaperone EcpB |
| RA | 309,985 | T→A | G14G (GGA→GGT) | ecpB ← | putative fimbrial chaperone EcpB |
| RA | 321,260 | A→T | intergenic (+179/‑348) | rclR → / → ykgE | DNA‑binding transcriptional activator RclR/putative lactate utilization oxidoreductase YkgE |
| RA | 365,306 | G→A | R334C (CGC→TGC) | lacZ ← | beta‑galactosidase |
| RA | 395,169 | C→T | E373E (GAG→GAA) | ampH ← | peptidoglycan DD‑carboxypeptidase/peptidoglycan DD‑endopeptidase |
| RA | 400,444 | G→A | T160T (ACC→ACT) | ddlA ← | D‑alanine‑‑D‑alanine ligase A |
| RA | 410,666 | C→T | P175S (CCT→TCT) | mak → | fructokinase |
| RA | 414,163 | G→A | R531* (CGA→TGA) | sbcC ← | ATP‑dependent structure‑specific DNA nuclease ‑ SbcC subunit |
| RA | 416,276 | G→A | A226V (GCA→GTA) | sbcD ← | ATP‑dependent structure‑specific DNA nuclease ‑ SbcD subunit |
| RA | 420,423 | G→A | G278D (GGC→GAC) | brnQ → | branched chain amino acid transporter BrnQ |
| RA | 421,027 | C→T | R14R (CGC→CGT) | proY → | putative transporter ProY |
| RA | 431,912 | C→T | W34* (TGG→TGA) | tsx ← | nucleoside‑specific channel‑forming protein Tsx |
| RA | 433,643 | C→T | A63A (GCC→GCT) | ribD → | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase/5‑amino‑6‑(5‑phosphoribosylamino)uracil reductase |
| RA | 465,005 | G→A | V181V (GTC→GTT) | queC ← | 7‑cyano‑7‑deazaguanine synthase |
| RA | 467,736 | G→A | G109S (GGT→AGT) | cof → | HMP‑PP phosphatase |
| RA | 471,709 | G→A | K358K (AAG→AAA) | mdlB → | ABC transporter family protein MdlB |
| RA | 472,849 | A→G | G84G (GGA→GGG) | glnK → | nitrogen regulatory protein PII‑2 |
| RA | 495,622 | C→T | T168I (ACC→ATC) | htpG → | chaperone protein HtpG |
| RA | 495,680 | C→T | F187F (TTC→TTT) | htpG → | chaperone protein HtpG |
| RA | 534,742 | G→A | G276D (GGT→GAT) | gcl → | glyoxylate carboligase |
| RA | 537,024 | C→T | P147S (CCG→TCG) | glxR → | tartronate semialdehyde reductase 2 |
| MC JC | 575,786 | Δ3,398 bp | IS5‑mediated | [nmpC]–borD | [nmpC], essD, rrrD, rzpD, rzoD, borD |
| RA | 582,597 | C→T | intergenic (+500/‑278) | tfaD → / → tfaX | putative tail fiber assembly protein TfaD/protein TfaX |
| RA | 627,348 | G→A | V427M (GTG→ATG) | entE → | 2,3‑dihydroxybenzoate‑AMP ligase |
| RA | 694,941 | G→A | L5L (CTC→CTT) | miaB ← | isopentenyl‑adenosine A37 tRNA methylthiolase |
| RA | 696,470 | C→T | noncoding (35/75 nt) | glnX ← | tRNA‑Gln |
| RA | 708,774 | G→A | A147A (GCG→GCA) | chiP → | chitooligosaccharide outer membrane channel |
| RA | 721,604 | G→A | R44C (CGT→TGT) | kdpE ← | DNA‑binding transcriptional activator KdpE |
| RA | 753,977 | G→A | R164R (CGC→CGT) | gltA ← | citrate synthase |
| RA | 758,462 | G→A | intergenic (+57/‑244) | sdhB → / → sucA | succinate:quinone oxidoreductase, iron‑sulfur cluster binding protein/subunit of E1(0) component of 2‑oxoglutarate dehydrogenase |
| JC JC | 771,449 | IS1 (–) +9 bp | intergenic (+838/‑1) | mngB → / → cydA | alpha‑mannosidase/cytochrome bd‑I subunit 1 |
| RA | 780,624 | C→T | noncoding (71/76 nt) | lysT → | tRNA‑Lys |
| RA | 789,580 | C→A | E134* (GAA→TAA) | galK ← | galactokinase |
| RA | 817,246 | G→C | R68P (CGC→CCC) | moaA → | GTP 3',8'‑cyclase |
| JC JC | 820,914 | IS5 (+) +4 bp | coding (122‑125/714 nt) | ybhM → | Bax1‑I family protein YbhM |
| RA | 822,527 | C→T | E405K (GAA→AAA) | clsB ← | cardiolipin synthase B |
| RA | 883,396 | C→T | intergenic (‑8/‑277) | ybjG ← / → mdfA | undecaprenyl pyrophosphate phosphatase/multidrug efflux pump MdfA/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| RA | 908,169 | C→T | R38R (AGG→AGA) | ybjT ← | putative NAD(P)‑binding protein YbjT |
| RA | 1,038,477 | 2 bp→AA | coding (738‑739/1545 nt) | appC → | cytochrome bd‑II subunit 1 |
| JC JC | 1,105,699 | IS1 (+) +9 bp | coding (286‑294/312 nt) | ymdA → | uncharacterized protein YmdA |
| RA | 1,123,823 | 2 bp→AG | coding (231‑232/648 nt) | grxB ← | reduced glutaredoxin 2 |
| RA | 1,147,792 | T→A | S58T (TCG→ACG) | plsX → | putative phosphate acyltransferase |
| RA | 1,153,007 | G→A | A357T (GCG→ACG) | fabF → | 3‑oxoacyl‑[acyl carrier protein] synthase 2 |
| RA | 1,169,836 | A→G | L180P (CTG→CCG) | ldtC ← | L,D‑transpeptidase LdtC |
| RA | 1,189,980 | A→G | T156T (ACT→ACC) | phoP ← | DNA‑binding transcriptional dual regulator PhoP |
| RA | 1,194,922 | G→A | T10T (ACC→ACT) | rluE ← | 23S rRNA pseudouridine(2457) synthase |
| RA | 1,253,002 | C→T | intergenic (+17/+83) | dhaR → / ← ycgV | DNA‑binding transcriptional dual regulator DhaR/putative autotransporter adhesin YcgV |
| RA | 1,301,992 | A→T | N271Y (AAT→TAT) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,306,736 | T→G | S325A (TCC→GCC) | oppF → | murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF |
| RA | 1,308,684 | T→C | intergenic (‑39/‑104) | clsA ← / → yciY | cardiolipin synthase A/uncharacterized protein YciY |
| RA | 1,331,059 | 2 bp→AT | coding (12‑13/2598 nt) | topA → | DNA topoisomerase 1 |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,358,859 | T→C | Y110C (TAT→TGT) | puuP ← | putrescine:H(+) symporter PuuP |
| RA | 1,395,367 | G→A | R186C (CGT→TGT) | ynaI ← | small conductance mechanosensitive channel YnaI |
| RA | 1,405,758 | G→A | intergenic (‑7/‑221) | mcaS ← / → smrA | small regulatory RNA McaS/DNA endonuclease SmrA |
| MC JC | 1,492,990 | Δ1,986 bp | [trg]–[ydcI] | [trg], [ydcI] | |
| RA | 1,497,385 | 4 bp→CAA | coding (530‑533/1656 nt) | opgD → | glucans biosynthesis protein D |
| RA | 1,517,587 | 2 bp→TT | intergenic (+25/‑60) | ortT → / → ydcY | orphan toxin OrtT/DUF2526 domain‑containing protein YdcY |
| RA | 1,522,583 | C→T | Q161Q (CAG→CAA) | yncD ← | putative TonB‑dependent outer membrane receptor |
| RA | 1,541,037 | A→G | I518I (ATT→ATC) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,541,058 | G→A | T511T (ACC→ACT) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,591,711 | C→A | E156* (GAG→TAG) | hipA ← | serine/threonine‑protein kinase toxin HipA |
| RA | 1,600,081 | C→T | W43* (TGG→TGA) | lsrK ← | autoinducer‑2 kinase |
| RA | 1,629,247 | C→T | I11I (ATC→ATT) | ydfZ → | putative selenoprotein YdfZ |
| RA | 1,643,679 | A→T | L209Q (CTG→CAG) | ydfU ← | protein YdfU |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| RA | 1,660,102 | C→T | N678N (AAC→AAT) | ynfE → | putative selenate reductase YnfE |
| RA | 1,664,866 | C→T | Q121* (CAA→TAA) | dmsD → | redox enzyme maturation protein DmsD |
| RA | 1,667,460 | G→A | Q369* (CAG→TAG) | mlc ← | DNA‑binding transcriptional repressor Mlc |
| RA | 1,712,661 | A→T | intergenic (+503/‑108) | nth → / → dtpA | endonuclease III/dipeptide/tripeptide:H(+) symporter DtpA |
| RA | 1,712,964 | +G | coding (196/1503 nt) | dtpA → | dipeptide/tripeptide:H(+) symporter DtpA |
| RA | 1,748,841 | C→T | R240K (AGA→AAA) | ydhT ← | uncharacterized protein YdhT |
| RA | 1,792,541 | C→T | G64E (GGA→GAA) | nlpC ← | NlpC/P60 family lipoprotein NlpC |
| RA | 1,799,792 | C→T | intergenic (‑43/+10) | rplT ← / ← rpmI | 50S ribosomal subunit protein L20/50S ribosomal subunit protein L35 |
| RA | 1,836,397 | G→A | E109K (GAG→AAG) | ynjB → | putative ABC transporter periplasmic binding protein YnjB |
| RA | 1,848,300 | 2 bp→TT | coding (376‑377/552 nt) | ydjA ← | putative oxidoreductase YdjA |
| RA | 1,894,839 | T→C | L12P (CTC→CCC) | pabB → | aminodeoxychorismate synthase subunit 1 |
| JC JC | 1,907,448 | IS5 (–) +4 bp | coding (141‑144/144 nt) | yobF ← | DUF2527 domain‑containing protein YobF |
| MC JC | 1,977,245 | Δ199 bp | [motR]–[flhC] | [motR], [flhC] | |
| RA | 2,002,825 | C→T | G261E (GGA→GAA) | fliC ← | flagellar filament structural protein |
| RA | 2,023,559 | A→G | T223A (ACT→GCT) | fliR → | flagellar biosynthesis protein FliR |
| RA | 2,027,332 | T→A | E229V (GAA→GTA) | dgcQ ← | diguanylate cyclase DgcQ |
| RA | 2,040,433 | C→A | A319D (GCC→GAC) | msrP → | protein‑L‑methionine sulfoxide reductase catalytic subunit MsrP |
| RA | 2,041,278 | G→A | intergenic (+160/‑97) | msrQ → / → zinT | membrane‑bound flavocytochrome MsrQ/metal‑binding protein ZinT |
| RA | 2,052,885 | G→A | intergenic (+871/‑758) | yeeJ → / → shiA | inverse autotransporter adhesin/shikimate:H(+) symporter |
| RA | 2,076,331 | C→T | L8L (CTC→CTT) | yeeS → | RadC‑like JAB domain‑containing protein YeeS |
| RA | 2,083,303 | C→T | A183V (GCG→GTG) | sbcB → | exodeoxyribonuclease I |
| RA | 2,090,780 | C→T | Q197* (CAA→TAA) | hisG → | ATP phosphoribosyltransferase |
| RA | 2,104,024 | G→T | I162I (ATC→ATA) | wbbK ← | putative glycosyltransferase WbbK |
| RA | 2,111,259 | Δ1 bp | coding (718/900 nt) | rfbD ← | dTDP‑4‑dehydrorhamnose reductase |
| RA | 2,120,969 | G→A | L196L (CTG→TTG) | wcaJ ← | UDP‑glucose:undecaprenyl‑phosphate glucose‑1‑phosphate transferase |
| RA | 2,142,598 | G→A | L117L (CTC→CTT) | udk ← | uridine/cytidine kinase |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,173,448 | C→T | intergenic (‑575/+834) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,233,609 | C→T | Q4* (CAG→TAG) | yeiS → | DUF2542 domain‑containing protein YeiS |
| JC JC | 2,239,316 | IS5 (–) +4 bp | intergenic (‑27/+31) | mglA ← / ← mglB | D‑galactose/methyl‑galactoside ABC transporter ATP binding subunit/D‑galactose/methyl‑galactoside ABC transporter periplasmic binding protein |
| RA | 2,242,247 | C→T | G241R (GGG→AGG) | yeiB ← | DUF418 domain‑containing protein YeiB |
| RA | 2,247,134 | A→C | Y467D (TAC→GAC) | lysP ← | lysine:H(+) symporter |
| RA | 2,361,210 | C→G | E69Q (GAA→CAA) | rhmD ← | L‑rhamnonate dehydratase |
| RA | 2,388,789 | C→T | P52L (CCG→CTG) | yfbO → | uncharacterized protein YfbO |
| RA | 2,404,402 | G→A | S71L (TCG→TTG) | nuoB ← | NADH:quinone oxidoreductase subunit B |
| RA | 2,481,608 | A→G | L190S (TTA→TCA) | emrY ← | tripartite efflux pump membrane subunit EmrY |
| RA | 2,498,392 | A→C | intergenic (‑97/‑279) | alaC ← / → pyrS | glutamate‑‑pyruvate aminotransferase AlaC/sensor histidine kinase PyrS |
| RA | 2,520,199 | A→G | G158G (GGT→GGC) | gltX ← | glutamate‑‑tRNA ligase |
| RA | 2,528,150 | C→T | E4K (GAG→AAG) | ypeB ← | PF12843 family protein YpeB |
| RA | 2,546,804 | T→A | D44E (GAT→GAA) | murP → | N‑acetylmuramic acid‑specific PTS enzyme IICB component/anhydro‑N‑acetylmuramic acid transporter |
| RA | 2,570,269 | G→A | P23P (CCC→CCT) | eutJ ← | putative ethanolamine utilization chaperonin EutJ |
| RA | 2,577,937 | T→C | E147E (GAA→GAG) | maeB ← | malate dehydrogenase (oxaloacetate‑decarboxylating) (NADP(+)) |
| RA | 2,587,112 | C→T | A461V (GCA→GTA) | narQ → | sensor histidine kinase NarQ |
| RA | 2,602,118 | A→G | T101A (ACT→GCT) | hyfB → | hydrogenase 4 component B |
| RA | 2,710,250 | G→A | intergenic (‑86/‑170) | rseD ← / → nadB | rpoE leader peptide/L‑aspartate oxidase |
| RA | 2,745,600 | A→G | Y107H (TAC→CAC) | rimM ← | ribosome maturation factor RimM |
| RA | 2,774,947 | G→A | G544S (GGT→AGT) | yfjW → | uncharacterized protein YfjW |
| RA | 2,867,455 | G→A | Q33* (CAG→TAG) | rpoS ← | RNA polymerase sigma factor RpoS |
| RA | 2,880,635 | T→C | L138L (TTA→TTG) | casD ← | type I‑E CRISPR system Cascade subunit CasD |
| RA | 2,926,772 | C→A | G155G (GGC→GGA) | ppnN → | nucleotide 5'‑monophosphate nucleosidase |
| JC JC | 2,955,094 | Δ1 bp :: IS186 (+) +6 bp :: Δ1 bp | coding (905‑910/3543 nt) | recB ← | exodeoxyribonuclease V subunit RecB |
| RA | 2,959,564 | C→T | W955* (TGG→TGA) | recC ← | exodeoxyribonuclease V subunit RecC |
| RA | 3,025,601 | (T)5→4 | coding (1251/1401 nt) | xanQ → | xanthine:H(+) symporter XanQ |
| RA | 3,070,858 | T→G | K129N (AAA→AAC) | fbaA ← | fructose‑bisphosphate aldolase class II |
| RA | 3,105,127 | G→A | G232E (GGA→GAA) | mltC → | membrane‑bound lytic murein transglycosylase C |
| MC JC | 3,131,341 | Δ128 bp | IS5‑mediated | yghQ ← | putative transport protein YghQ |
| RA | 3,148,900 | G→A | G335D (GGC→GAC) | gpr → | L‑glyceraldehyde 3‑phosphate reductase |
| RA | 3,183,557 | Δ1 bp | intergenic (‑6/+256) | yqiD ← / ← ribB | protein YqiD/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,207,549 | Δ1 bp | coding (179/606 nt) | ttdB → | L(+)‑tartrate dehydratase subunit beta |
| RA | 3,256,301 | G→A | S117S (TCC→TCT) | cyuA ← | putative L‑cysteine desulfidase CyuA |
| RA | 3,279,276 | C→G | F121L (TTC→TTG) | kbaZ → | putative tagatose‑1,6‑bisphosphate aldolase 1 chaperone |
| RA | 3,296,481 | G→A | V25M (GTG→ATG) | dolP → | division and outer membrane stress‑associated lipid‑binding lipoprotein |
| RA | 3,329,064 | C→T | A34A (GCC→GCT) | dacB → | peptidoglycan DD‑endopeptidase DacB |
| RA | 3,329,743 | G→T | D261Y (GAT→TAT) | dacB → | peptidoglycan DD‑endopeptidase DacB |
| RA | 3,335,791 | G→A | T235I (ACC→ATC) | murA ← | UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
| RA | 3,388,041 | T→G | T50P (ACG→CCG) | aaeB ← | aromatic carboxylic acid efflux pump subunit AaeB |
| RA | 3,391,418 | C→T | G204D (GGC→GAC) | tldD ← | metalloprotease subunit TldD |
| RA | 3,411,689 | G→T | E13* (GAA→TAA) | yhdJ → | DNA adenine methyltransferase |
| RA | 3,433,900 | C→T | L71L (CTA→TTA) | def → | peptide deformylase |
| RA | 3,474,425 | T→G | K43T (AAA→ACA) | rpsL ← | 30S ribosomal subunit protein S12 |
| RA | 3,486,175 | G→A | C19Y (TGC→TAC) | crp → | DNA‑binding transcriptional dual regulator CRP |
| RA | 3,486,502 | C→T | T128I (ACT→ATT) | crp → | DNA‑binding transcriptional dual regulator CRP |
| RA | 3,489,288 | G→A | A298V (GCG→GTG) | argD ← | N‑acetylornithine aminotransferase/N‑succinyldiaminopimelate aminotransferase |
| RA | 3,507,249 | C→T | D30N (GAC→AAC) | yhfT ← | uncharacterized protein YhfT |
| RA | 3,511,466 | C→T | V293V (GTG→GTA) | yhfZ ← | putative DNA‑binding transcriptional regulator YhfZ |
| RA | 3,555,047 | 2 bp→TG | coding (1963‑1964/2706 nt) | malT → | DNA‑binding transcriptional activator MalT |
| RA | 3,560,362 | G→A | intergenic (+496/+260) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,646,970 | G→T | Q224H (CAG→CAT) | gor → | glutathione reductase (NADPH) |
| RA | 3,647,428 | C→T | A377V (GCG→GTG) | gor → | glutathione reductase (NADPH) |
| RA | 3,679,581 | G→A | G55R (GGA→AGA) | kdgK → | 2‑dehydro‑3‑deoxygluconokinase |
| RA | 3,707,947 | C→A | intergenic (‑242/+669) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| RA | 3,719,429 | G→A | intergenic (‑385/‑49) | yiaF ← / → yiaG | DUF3053 domain‑containing protein YiaF/putative DNA‑binding transcriptional regulator YiaG |
| RA | 3,725,176 | T→G | E48A (GAG→GCG) | glyQ ← | glycine‑‑tRNA ligase subunit alpha |
| RA | 3,729,440 | 2 bp→TT | noncoding (105‑106/160 nt) | xylZ ← | small RNA XylZ |
| RA | 3,730,560 | C→T | W69* (TGG→TAG) | xylA ← | xylose isomerase |
| RA | 3,770,539 | C→T | V281M (GTG→ATG) | yibH ← | inner membrane protein YibH |
| RA | 3,773,173 | Δ1 bp | coding (893/1914 nt) | mtlA → | mannitol‑specific PTS enzyme IICBA component |
| RA | 3,773,176 | C→T | S299F (TCT→TTT) | mtlA → | mannitol‑specific PTS enzyme IICBA component |
| JC JC | 3,801,997 | IS1 (–) +9 bp | [waaJ] | [waaJ] | |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,817,167 | C→T | T164T (ACC→ACT) | yicC → | putative RNase adaptor protein YicC |
| RA | 3,926,991 | G→A | L5L (CTG→TTG) | asnC ← | DNA‑binding transcriptional dual regulator AsnC |
| RA | 3,931,779 | T→C | F155S (TTT→TCT) | kup → | K(+):H(+) symporter Kup |
| RA | 3,966,530 | 2 bp→TT | coding (114‑115/1260 nt) | rho → | transcription termination factor Rho |
| RA | 4,026,650 | G→A | D42N (GAT→AAT) | fre → | NAD(P)H‑flavin reductase |
| RA | 4,082,106 | G→A | G218G (GGC→GGT) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | 4,131,375 | G→A | R514H (CGC→CAC) | metL → | fused aspartate kinase/homoserine dehydrogenase 2 |
| RA | 4,153,836 | G→A | Q338* (CAA→TAA) | argE ← | acetylornithine deacetylase |
| RA | 4,187,828 | G→A | E827K (GAG→AAG) | rpoC → | RNA polymerase subunit beta' |
| RA | 4,193,996 | T→G | D70A (GAT→GCT) | thiE ← | thiamine phosphate synthase |
| RA | 4,215,670 | G→T | D65Y (GAT→TAT) | aceB → | malate synthase A |
| RA | 4,218,853 | C→T | Y86Y (TAC→TAT) | aceK → | isocitrate dehydrogenase kinase/phosphatase |
| RA | 4,223,638 | T→C | intergenic (‑10/‑190) | iclR ← / → metH | DNA‑binding transcriptional repressor IclR/cobalamin‑dependent methionine synthase |
| RA | 4,224,762 | G→A | G312D (GGC→GAC) | metH → | cobalamin‑dependent methionine synthase |
| RA | 4,225,271 | G→A | V482I (GTA→ATA) | metH → | cobalamin‑dependent methionine synthase |
| RA | 4,261,296 | C→T | S233L (TCG→TTG) | yjbM → | DUF2713 domain‑containing protein YjbM |
| RA | 4,296,382 | +C | intergenic (+588/+54) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,306,660 | G→A | intergenic (‑63/+210) | yjcS ← / ← alsK | linear primary‑alkylsulfatase/D‑allose kinase |
| RA | 4,316,498 | G→A | H241Y (CAC→TAC) | phnM ← | RPnTP hydrolase |
| RA | 4,325,644 | C→T | S33N (AGC→AAC) | yjdN ← | PF06983 family protein YjdN |
| RA | 4,331,890 | C→T | L463L (CTC→CTT) | proP → | osmolyte:H(+) symporter ProP |
| RA | 4,437,890 | C→T | Q62* (CAG→TAG) | ytfI → | protein YtfI |
| RA | 4,473,900 | C→T | G52R (GGA→AGA) | bdcA ← | c‑di‑GMP‑binding biofilm dispersal mediator protein |
| RA | 4,475,493 | T→C | F19F (TTT→TTC) | yjgL → | protein YjgL |
| RA | 4,476,605 | G→A | S390N (AGC→AAC) | yjgL → | protein YjgL |
| RA | 4,479,944 | G→A | G72E (GGG→GAG) | yjgN → | inner membrane protein YjgN |
| RA | 4,489,016 | C→T | E350K (GAA→AAA) | yjgR ← | DUF853 domain‑containing protein YjgR |
| RA | 4,499,998 | G→C | intergenic (+498/‑1262) | insD6 → / → yjgZ | IS2 insertion element protein InsB/uncharacterized protein YjgZ |
| RA | 4,510,238 | T→G | intergenic (+445/+452) | insO → / ← fecE | IS911B regulator fragment/ferric citrate ABC transporter ATP binding subunit |
| JC JC | 4,606,217 | Δ1 bp :: IS186 (+) +6 bp | noncoding (65‑70/87 nt) | leuP ← | tRNA‑Leu |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 164573 | 164634 | 62 | 2 [1] | [1] 3 | hrpB/mrcB | RNA‑dependent NTPase HrpB/peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB |
| * | * | ÷ | NC_000913 | 361657 | 362203 | 547 | 22 [0] | [0] 24 | [lacA]–[lacY] | [lacA],[lacY] |
| * | * | ÷ | NC_000913 | 826836 | 826872 | 37 | 2 [1] | [1] 2 | ybhS | ABC exporter membrane subunit YbhS |
| * | * | ÷ | NC_000913 | 1196340 | 1211433 | 15094 | 2 [1] | [1] 2 | [icd]–mcrA | [icd],C0293,ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA |
| * | * | ÷ | NC_000913 | 1311121 | 1311276 | 156 | 2 [1] | [1] 2 | tonB | Ton complex subunit TonB |
| * | * | ÷ | NC_000913 | 1411925 | 1427749 | 15825 | 11 [0] | [0] 2 | [ttcA]–[insH5] | [ttcA],intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,kilS,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzoR,trkG,ynaK,ydaY,ynaA,lomR,[insH5] |
| * | * | ÷ | NC_000913 | 1427802 | 1428097 | 296 | 2 [0] | [1] 2 | insH5 | IS5 family transposase and trans‑activator |
| * | * | ÷ | NC_000913 | 1428301 | 1434984 | 6684 | 2 [1] | [0] 11 | [insH5]–ynaM | [insH5],lomR,stfR,tfaR,pinR,ynaE,ynaM |
| * | * | ÷ | NC_000913 | 1976415 | 1976442 | 28 | 2 [1] | [1] 2 | motA | motility protein A |
| * | * | ÷ | NC_000913 | 1978484 | 1979270–1978503 | 20–787 | 24 [0] | [0] 18 | insB5–insA5 | insB5,insA5 |
| * | * | ÷ | NC_000913 | 2304774 | 2304804–2304799 | 26–31 | 2 [1] | [1] 2 | eco/mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
| * | * | ÷ | NC_000913 | 2558699 | 2565487 | 6789 | 9 [0] | [0] 2 | intZ–[eutA] | intZ,yffL,yffM,yffN,yffO,yffP,yffQ,yffR,yffS,[eutA] |
| * | * | ÷ | NC_000913 | 3239618 | 3239624 | 7 | 2 [0] | [1] 2 | alx/sstT | putative membrane‑bound redox modulator Alx/serine/threonine:Na(+) symporter |
| * | * | ÷ | NC_000913 | 3423893–3424232 | 3424411–3424239 | 8–519 | 2 [1] | [1] 2 | rrlD | 23S ribosomal RNA |
| * | * | ÷ | NC_000913 | 4070469 | 4070522 | 54 | 2 [0] | [1] 3 | [yihS] | [yihS] |
| * | * | ÷ | NC_000913 | 4542050 | 4544734 | 2685 | 19 [0] | [0] 19 | [fimE]–[fimC] | [fimE],fimA,fimI,[fimC] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 19796 = | NA (NA) | 22 (1.420) | 17/306 | 0.0 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 361656 | 0 (0.000) | coding (205/612 nt) | lacA | galactoside O‑acetyltransferase | |||||
| * | ? | NC_000913 | = 258675 | NA (NA) | 24 (1.540) | 18/308 | 0.0 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 362204 = | 0 (0.000) | coding (976/1254 nt) | lacY | lactose permease | |||||
| * | ? | NC_000913 | = 1411924 | 0 (0.000) | 11 (0.850) | 10/256 | 0.2 | 100% | coding (25/936 nt) | ttcA | tRNA cytosine(32) 2‑sulfurtransferase TtcA |
| ? | NC_000913 | 1434985 = | 0 (0.000) | intergenic (‑579/+200) | ynaM/uspF | protein YnaM/universal stress protein F | |||||
| * | ? | NC_000913 | = 1978483 | 0 (0.000) | 24 (1.540) | 23/308 | 0.0 | 100% | intergenic (‑286/+35) | flhD/insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB |
| ? | NC_000913 | = 2070271 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1979271 = | 0 (0.000) | 17 (1.210) +TTAAGTAATTGAGTG |
12/278 | 0.1 | 100% | intergenic (‑56/‑482) | insA5/uspC | IS1 family protein InsA/universal stress protein C |
| ? | NC_000913 | 2996360 = | NA (NA) | intergenic (+2504/+12) | ygeI/insD4 | protein YgeI/IS2 insertion element protein InsB | |||||
| * | ? | NC_000913 | = 2558698 | 0 (0.000) | 8 (0.540) | 7/292 | 0.5 | 100% | intergenic (‑19/‑160) | eutB/intZ | ethanolamine ammonia‑lyase subunit alpha/putative phage integrase IntZ |
| ? | NC_000913 | 2565489 = | 0 (0.000) | coding (1396/1404 nt) | eutA | ethanolamine ammonia‑lyase reactivase EutA | |||||
| * | ? | NC_000913 | 3583428 = | NA (NA) | 19 (1.230) | 17/306 | 0.0 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 4542049 | 0 (0.000) | coding (13/597 nt) | fimE | regulator for fimA | |||||
| * | ? | NC_000913 | = 3584195 | NA (NA) | 18 (1.160) | 11/308 | 0.2 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 4544735 = | 0 (0.000) | coding (432/726 nt) | fimC | type 1 fimbriae periplasmic chaperone | |||||