New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 258675	NA (NA)	24 (1.540)	18/308	0.0	100%	noncoding (1/768 nt)	IS1	repeat region
	?	NC_000913	362204 =	0 (0.000)					coding (976/1254 nt)	lacY	lactose permease

AAGCGGGCCGGGGCCGCTAAGCGTGAACACGGAAATTAAGGTGAAGCCCAGCGCCACCAGACCCAGCACCAGATAAGCGCCCTGGAAACCGATGCTTTCATACATATTGCCCGCCAGTACAGACATAAAAATCATCGCCAGTTGCTTAAAGAAGCAGAAACAGACCAGATAAATCGTCGCTGAAAAACGCACTTCAAACTGGCTGGTAATATATTTAAAGCAGCCCACCAGCAGGAACGGTACTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGTAGCCAAATACCCGCGTACCCTGTTCACCGGTAGCAAAGAACG  >  NC_000913/361962‑362434                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                       cattcatggccatatcaatgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagggagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagcccctggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAAc                                                                                                                                                                                                                                 >  1:24959‑M2/243‑250 (MQ=255)          ccatatcaatgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCg                                                                                                                                                                                                                       >  1:10310‑M2/234‑251 (MQ=255)                                                                  agttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATAcgn                                                                                                                                                               <  1:102130‑M2/74‑2 (MQ=255)                                                                     tgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctaatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcagcaccCTTCAAACATATGCAGCGTTGTCAGAATAACCACGTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTAc                                                                                                                                                             <  1:359403‑M2/76‑1 (MQ=255)                                                                                   gcagtgagagcagagatagcgctgatgtccggcggtgctttttccgttccgcaccaccccgtcagtagctgaacaggcgggaccgctgatcgaaccagaagccactggcgcacctcaaaaacacaatcgtccactacctcagtacgttggcagcatcaccATTCACCCATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTgcc                                                                                                                                              >  1:175492‑M2/161‑251 (MQ=255)                                                                                              agagatagcgctgatgtccggcggtgcttttgccgttacacaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctccaaaacaccatcatacactaaatcagtaagttggcagcatcactCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACg                                                                                                                                                                                >  1:354337‑M2/150‑206 (MQ=255)                                                                                                               nnngcgntgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAAc                                                                                                                                                                                                                                 <  2:220084‑M2/8‑1 (MQ=255)                                                                                                                    ggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCa                                                                                                                     >  1:77221‑M2/128‑243 (MQ=255)                                                                                                                               ngttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTc                                                                                                                                                                                                                                     >  1:284919‑M2/117‑120 (MQ=255)                                                                                                                                   ncgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACat                                                                                                                                                                                                                               >  1:221403‑M2/113‑122 (MQ=255)                                                                                                                                   acgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACat                                                                                                                                                                                                                               <  2:221403‑M2/10‑1 (MQ=255)                                                                                                                                                        tgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccagcatacactaaatcagtaagttggcagcatcaccCTTCAAACAGATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAg                                                                                                                                                                                          <  1:329505‑M2/47‑1 (MQ=255)                                                                                                                                                                                      agccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGGTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGTa                                           <  1:25539‑M2/190‑1 (MQ=255)                                                                                                                                                                                         cactggagcacctcaaaaactccatcatacactaaatcagtaagttggcagcagcaccCTTCAAACATATGCAGCGGTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAAGAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTGCCCACCGATGCGATTAATGAGCAGGGGCGCAAAAAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGTAGcc                                        <  1:159409‑M2/193‑1 (MQ=255)                                                                                                                                                                                           ctggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGTAGCCa                                       >  1:4957‑M2/57‑250 (MQ=255)                                                                                                                                                                                                  acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAggg                                                                                                                                <  1:279129‑M2/105‑1 (MQ=255)                                                                                                                                                                                                   nctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGaa                                                                                                                                                                                  >  1:220734‑M2/49‑103 (MQ=255)                                                                                                                                                                                                   cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGaa                                                                                                                                                                                  <  2:220734‑M2/55‑1 (MQ=255)                                                                                                                                                                                                         aaacaccatcatacactaaatcagtaagttggcagcatcaccCTCCAAACATATGCAGCGTTTTCAGAATAACCACTTcc                                                                                                                                                                                                   <  1:320584‑M2/38‑1 (MQ=255)                                                                                                                                                                                                                  catacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGTAACCAAATACCCGCGTACCCTGTTCacn                <  1:103065‑M2/217‑2 (MQ=255)                                                                                                                                                                                                                             tcagtaagtgggcagcatcaccCTTCAAACAGATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTgg                                                                                                                                                                                      <  1:260122‑M2/51‑1 (MQ=255)                                                                                                                                                                                                                                gtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGAAGCCAAATACACGCGTACCCTGTTCACCGGTAGCAAAGAACg  >  1:29429‑M2/20‑250 (MQ=255)                                                                                                                                                                                                                                        gcagcatctccCTTCAAACATATGCATCGTTTTCAGAATAACCACTTCCGTCGCTGAGGTGGCGAAGGATGAGCCAATAATACGTACAGACATAATAGtgccan                                                                                                                                            <  1:67809‑M2/93‑2 (MQ=255)                                                                                                                                                                                                                                              tcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACAGAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACAAAATCGAGGCGTTAAGTAATTCGcc                                                          <  1:323392‑M2/175‑1 (MQ=255)                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                       AAGCGGGCCGGGGCCGCTAAGCGTGAACACGGAAATTAAGGTGAAGCCCAGCGCCACCAGACCCAGCACCAGATAAGCGCCCTGGAAACCGATGCTTTCATACATATTGCCCGCCAGTACAGACATAAAAATCATCGCCAGTTGCTTAAAGAAGCAGAAACAGACCAGATAAATCGTCGCTGAAAAACGCACTTCAAACTGGCTGGTAATATATTTAAAGCAGCCCACCAGCAGGAACGGTACTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGTAGCCAAATACCCGCGTACCCTGTTCACCGGTAGCAAAGAACG  >  NC_000913/361962‑362434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.